CANTATAdb - search

Detailed information on CNT30201828

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CC67|NU2C2_GOSHI, E-value = 5e-78

BLAST vs NONCODE:
NONVVIT001954, E-value = 1e-145

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30406248	Pisum sativum	Beta vulgaris	48.65	100	92.86	252	forward
CNT30503696	Pisum sativum	Nicotiana attenuata	38.8	18.94	98.01	201	forward
CNT30712908	Pisum sativum	Glycine max	20.46	13.05	92.45	106	forward

Expression of CNT30201828

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MRFMLVWVIAMRFPNIMLRIARISRRRCHSFDEK*

Sequence

>CNT30201828
GTCCAGTCATTAATAACTTCATTATTTTTAGATAATAGAAGATAGAAACAACGCTTGTAAGAAGTCCTATTGAAACCAAGAAATATCGGCCTGCTTGCCA
TCCACACCAGAATAAAGAAAGTTTTCCGAAAAAACCAGCTAGTGGAGGAAGACCTCCTAAGGATAAGAGACATTGGGCTAAAGAGAGAGCCAAAAAAGGA
TCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAACACAATGCAAGCAAAAGTTCCTAGATTCATGGAGATAT
AGAACAGCATATAAGTTATCATGCTTGCATATCCACCATTTGAGTCTCCAACAATTATTCCAATAATGACATATCCAATTTGACCTATGGACGAATAGGC
AAGCATGCGTTTCATGCTTGTTTGGGTAATAGCAATGAGATTCCCTAATATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGAT
GAGAAATAAAAAGGAATA