Detailed information on CNT30201820


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CD27|NU2C2_PELHO, E-value = 4e-63

BLAST vs NONCODE:
NONVVIT001949, E-value = 2e-126

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30229065Pisum sativumAnanas comosus44.8268.5895.22251forward
CNT30626039Pisum sativumDaucus carota28.7512.3188.2161reverse complement
CNT30153321Pisum sativumPrunus persica25.8929.996.55145reverse complement
CNT30425623Pisum sativumPapaver somniferum38.9347.8194.04218forward
CNT3053197Pisum sativumAmborella trichopoda94.4633.191.12529forward
CNT3025558Pisum sativumPopulus trichocarpa35.1824.3297.97197forward
CNT3036892Pisum sativumCucumis melo57.8629.7295.37324forward
CNT30147748Pisum sativumBrachypodium distachyon96.9680.5695.21543forward

Expression of CNT30201820

Peptides detected in this lncRNA

>peptide 1 (90 aa)
LAIHTRIKKVFRKNQLVEEDLLRIRDIGLKREPKKDLSCIILHNLECYQFRYVDQITQCKQKFLDSWRYRAAYKLSCLHIHHLSLQQLFQ*

>peptide 2 (31 aa)
MLVWVMAMRFPNIMLRIARISRRRCHSFDEK*

>peptide 3 (43 aa)
ACHPHQNKESFPKKPASGGRPPKDKRHWAKERAKKGSFVYNPA*

Sequence

>CNT30201820
GCTTGCCATCCACACCAGAATAAAGAAAGTTTTCCGAAAAAACCAGCTAGTGGAGGAAGACCTCCTAAGGATAAGAGACATTGGGCTAAAGAGAGAGCCA
AAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAACACAATGCAAGCAAAAGTTCCTAGATTCAT
GGAGATATAGAGCAGCATATAAGTTATCATGCTTGCATATCCACCATTTGAGTCTCCAACAATTATTCCAATAATGACATATCCAATTTGACCTATGGAC
GAATAGGCAAGCATACGTTTCATGCTTGTTTGGGTAATGGCAATGAGATTCCCTAATATCATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATT
CGTTTGATGAGAAATAAAAAGGAATATCCAAAATTTGAGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGG
AGAGTCAGAGTCGAAAAGAGGATTCCTCACTTCTTTCTCTCATTCAAAACCGTGCAGGAG