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Detailed information on CNT30201818


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6KGX3|RR7_PEA, E-value = 3e-65

BLAST vs NONCODE:
NONOSAT000698, E-value = 2e-66

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677912Pisum sativumSetaria viridis23.5320.1594.14324forward
CNT3021516Pisum sativumCitrullus lanatus26.1419.5894.44360forward
CNT30284960Pisum sativumTriticum aestivum25.3439.391.98349forward
CNT30384007Pisum sativumTriticum turgidum25.3439.9890.54349forward
CNT30569656Pisum sativumActinidia chinensis25.5641.8193.75352forward
CNT30543269Pisum sativumBrassica napus28.413.2193.09391forward
CNT3018194Pisum sativumZea mays23.5355.2994.14324forward
CNT30684701Pisum sativumTriticum urartu14.3142.5591.88197forward
CNT30356947Pisum sativumLactuca sativa24.4766.7394.66337forward
CNT30416238Pisum sativumPapaver somniferum24.6244.2693.81339forward

Expression of CNT30201818

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MNGKFFSLCRFYFNGNLMSRSAHASCFYC*

>peptide 2 (33 aa)
MASPLPLAASTNSELNLKAIFQPRHFRDAANNQ*

>peptide 3 (35 aa)
MFELNTFFYSQRRKLFFFLISFLFCHYSFVSSCKI*

>peptide 4 (41 aa)
MKLLVFSLSTYVVRILFKSISIENLFFCMNQYYSIPIPCQYF

>peptide 5 (61 aa)
MPLITNEWQVLFLVSILFQWELDESIRSRVLLLLLDWELPGVLLHVKRIVDLFLSFVESFS*

>peptide 6 (71 aa)
MPLITNEWQVLFLVSILFQWELDESIRSRVLLLLLDWELPDVLLHVKFRDAANNQRMASSFPCVDSISMGT*

Sequence

>CNT30201818
CCATTCTATGAGTCTCTTCCTTTTTGCGTATGGCATCACCACTCCCTTTGGCAGCATCCACTAATTCGGAACTTAATTTGAAAGCCATATTTCAACCAAG
ACATTTTCGGGATGCCGCTAATAACCAATGAATGGCAAGTTCTTTTCCTTGTGTCGATTCTATTTCAATGGGAACTTGATGAGTCGATCCGCTCACGCGT
CTTGCTTTTACTGCTAGATTGGGAGTTACCCGACGTATTGCTTCACGTAAAATTTCGGGATGCCGCTAATAACCAACGAATGGCAAGTTCTTTTCCTTGT
GTCGATTCTATTTCAATGGGAACTTGATGAGTCGATCCGCTCACGCGTCTTGCTTTTACTGCTAGATTGGGAGTTACCCGGCGTATTGCTTCACGTAAAA
CGGATAGTGGATTTGTTTTTGTCTTTTGTTGAATCCTTTTCATAGCTCGATAGATAATTAGATAAGCCAATGATTTTTTTCCGTGTTTCATAATACGGTT
AACCAACATTTTAACTACTCGATTACGATAAATTGGATCGGATTTTGCTATTTTTTTTTTTTCTGCAGTACCTCGTCGTGACATGAGCGTAATAATCCAT
TTTTTTATAACTTATGGGGGCTAAAAAAATTTATTTTGACTTTTTGGCTCCATATTTTGAACGCCCTTGTTGACGATCCTTTACTGCGACAGCATCCAGG
GTTCCTCGAACAATGTGATATCTCACACCAGGTAAATCCTTAACCCTTCCCCCTCTTACTAAGACTACAGAATGTTCTTGTAAATTATGGCCAATACCAG
GTATATAAGCAGTGATTTCAAATCCAGAGGTTAAGCATACTCTGGCAACTTTACGTAACGCAGAGTTTGGTTTTTTAGGGGTTAATAGTGGAAAAGTTGA
CAGATAAGTAATCCTTACTGCCACTCTACAGAACCGTACATGAGATTTTCACCGCATACGGCTCCTCGTTCAATTCTTTCGACGTAATTCGATCCCTTAT
CCTCGTTCGATAATCTCCACTTCTTCCCCCAAACCCAAAATCACGAGAACTAATTAAGTCAGTCACGTTTTCATGTTTGAATTGAACACTTTTTTTTATT
CTCAAAGGAGAAAATTATTCTTTTTTCTTATTTCTTTTCTTTTTTGCCATTATTCCTTCGTTTCATCCTGTAAGATCTGACCCATTTTCTTATTCATCGA
AAGGTCAGGTACGGAATAAAGAAGATTGATTTTTTGATCAAAAGTACTATATGAAATTGTTGGTTTTTTCTCTTTCTACCTATGTTGTAAGAATACTGTT
TAAATCAATATCAATAGAAAACCTTTTTTTCTGTATGAATCAATATTATTCCATTCCAATTCCTTGCCAATATTTCC