Detailed information on CNT30201817


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2PMN7|NU1C_SOYBN, E-value = 3e-93

BLAST vs NONCODE:
NONMEST004538, E-value = 6e-34

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30531354Pisum sativumEucalyptus grandis98.7122.8688.03610forward
CNT30317759Pisum sativumCorylus avellana99.3530.1190.72614forward
CNT30518402Pisum sativumJuglans regia37.3860.3193.94231forward
CNT30615574Pisum sativumSesamum indicum98.8741.0389.2611forward
CNT30406240Pisum sativumBeta vulgaris41.198.0791.73254forward
CNT30712407Pisum sativumGlycine max99.3549.5291.53614forward
CNT30569544Pisum sativumActinidia chinensis98.8716.5489.53611forward
CNT30237694Pisum sativumBrassica oleracea83.547.1288.37516forward
CNT30608772Pisum sativumGossypium raimondii46.4491.493.38287forward
CNT30215974Pisum sativumHelianthus annuus47.5740.1691.16294forward
CNT30596717Pisum sativumOryza meridionalis52.9135.1686.24327forward
CNT30360555Pisum sativumLactuca sativa98.8755.888.87611forward
CNT30151942Pisum sativumPrunus persica99.3526.1688.11614forward
CNT3057989Pisum sativumAmborella trichopoda5058.8687.38309forward
CNT3035415Pisum sativumCucumis melo89.4882.7888.61553forward
CNT30148081Pisum sativumBrachypodium distachyon99.3560.6183.88614forward
CNT30116024Pisum sativumOryza nivara5068.9787.7309forward
CNT30723989Pisum sativumLupinus angustifolius64.8928.7793.02401forward

Expression of CNT30201817

Peptides detected in this lncRNA

>peptide 1 (32 aa)
PATNSSSASGKSKGNLSHSASEEIRKTMKPIG*

>peptide 2 (35 aa)
MDMTDRDGPILNKRISPLDGIRFSLNSSFVPSARA*

Sequence

>CNT30201817
ACCAGCTACTAATTCTTCTTCTGCTTCTGGTAAATCAAAAGGTAATCTTTCACATTCTGCTAGCGAAGAAATTAGAAAAACGATGAAACCCATAGGTTGA
CGCCACAAATTCAACCCCAAAAACCATATTTTGATTGCGCATCAACTATATCAACTGTACTTAAACTGTTAGATAATCCTAATATTGATAAGACACATAG
AGTTAATGGTATTTCATAACTAATCGATTGAGCAGCAGCTCGTAGACCACCCAAAAAGGAATATTTATTATTTGAGCCATATCCTGACATAAGAAGTCCA
ATGGGAGCAATACTCGAAATAGCAATCCATAAAAAAACACCTATATTGAAATCAGATAAAACAAAGTTATAGCCAAAGGGAATTACTGAATAACTTATTA
GAATGGATATGACTGATAGGGATGGTCCGATACTGAATAAACGAATATCTCCCCTAGATGGAATAAGATTCTCTTTGAATAGTAGTTTTGTTCCGTCTGC
TAGAGCTTGAAGAATTCCAAAAGGACCAGCATATTCAGGTCCAATACGCTGTTGTACCCCTGCAGATATTTCTCTTTCTAACCATACAATTGCTAGTACA
CTTAGTGTGATTCCCAAG