Detailed information on CNT30201813


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6KGX3|RR7_PEA, E-value = 2e-64

BLAST vs NONCODE:
NONVVIT000515, E-value = 3e-87

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678334Pisum sativumSetaria viridis17.9430.2294.22294forward
CNT30730546Pisum sativumCorchorus capsularis18.0650.0891.89296forward
CNT30406883Pisum sativumBeta vulgaris9.8262.6588.82161forward
CNT30710142Pisum sativumGlycine max10.2537.6794.05168forward
CNT3083498Pisum sativumVigna radiata3.8427.1695.2463reverse complement
CNT30509374Pisum sativumSolanum lycopersicum6.0449.587.8899forward
CNT30331679Pisum sativumDioscorea rotundata18.0643.2191.89296forward
CNT30150659Pisum sativumBrachypodium distachyon5.4338.0388.7689forward
CNT30100515Pisum sativumOryza rufipogon5.6136.2290.2292reverse complement

Expression of CNT30201813

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MASPLPLAASTNSELNLKAIFQPRHFRDAANNQ*

>peptide 2 (71 aa)
MPLITNEWQVLFLVSILFQWELDESIRSRVLLLLLDWELPDVLLHVKFRDAANNQRMASSFPCVDSISMGT*

>peptide 3 (61 aa)
MPLITNEWQVLFLVSILFQWELDESIRSRVLLLLLDWELPGVLLHVKRIVDLFLSFVESFS*

>peptide 4 (49 aa)
MKLLVFSLSTYVVRILFKSISIENLFFCMNQYYSIPIPCQYFRFFYALT*

>peptide 5 (35 aa)
MFELNTFFYSQRRKLFFFLISFLFCHYSFVSSCKI*

>peptide 6 (29 aa)
MNGKFFSLCRFYFNGNLMSRSAHASCFYC*

Sequence

>CNT30201813
CTTCCGCCATTCTATGAGTCTCTTCCTTTTTGCGTATGGCATCACCACTCCCTTTGGCAGCATCCACTAATTCGGAACTTAATTTGAAAGCCATATTTCA
ACCAAGACATTTTCGGGATGCCGCTAATAACCAATGAATGGCAAGTTCTTTTCCTTGTGTCGATTCTATTTCAATGGGAACTTGATGAGTCGATCCGCTC
ACGCGTCTTGCTTTTACTGCTAGATTGGGAGTTACCCGACGTATTGCTTCACGTAAAATTTCGGGATGCCGCTAATAACCAACGAATGGCAAGTTCTTTT
CCTTGTGTCGATTCTATTTCAATGGGAACTTGATGAGTCGATCCGCTCACGCGTCTTGCTTTTACTGCTAGATTGGGAGTTACCCGGCGTATTGCTTCAC
GTAAAACGGATAGTGGATTTGTTTTTGTCTTTTGTTGAATCCTTTTCATAGCTCGATAGATAATTAGATAAGCCAATGATTTTTTTCCGTGTTTCATAAT
ACGGTTAACCAACATTTTAACTACTCGATTACGATAAATTGGATCGGATTTTGCTATTTTTTTTTTTTCTGCAGTACCTCGTCGTGACATGAGCGTAATA
ATCCATTTTTTTATAACTTATGGGGGCTAAAAAAATTTATTTTGACTTTTTGGCTCCATATTTTGAACGCCCTTGTTGACGATCCTTTACTGCGACAGCA
TCCAGGGTTCCTCGAACAATGTGATATCTCACACCAGGTAAATCCTTAACCCTTCCCCCTCTTACTAAGACTACAGAATGTTCTTGTAAATTATGGCCAA
TACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAAGCATACTCTGGCAACTTTACGTAACGCAGAGTTTGGTTTTTTAGGGTTAATAGTGGAAAA
GTTGACAGATAAGTAATCCTTACTGCCACTCTACAGAACCGTACATGAGATTTTCACCGCATACGGCTCCTTTTGGTTTTTTAGGGTTAATAGTGGAAAA
GTTGACAGATAAGTAATCCTTACTGCCACTCTACAGAACCGTACATGAGATTTTCACCGCATACGGCTCCTCGTTCAATTCTTTCGACGTAATTCGATCC
CTTATCCTCGTTCGATAATCTCCACTTCTTCCCCCAAACCCAAAATCACGAGAACTAATTAAGTCAGTCACGTTTTCATGTTTGAATTGAACACTTTTTT
TTATTCTCAAAGGAGAAAATTATTCTTTTTTCTTATTTCTTTTCTTTTTTGCCATTATTCCTTCGTTTCATCCTGTAAGATCTGACCCATTTTCTTATTC
ATCGAAAGGTCAGGTACGGAATAAAGAAGATTGATTTTTTGATCAAAAGTACTATATGAAATTGTTGGTTTTTTCTCTTTCTACCTATGTTGTAAGAATA
CTGTTTAAATCAATATCAATAGAAAACCTTTTTTTCTGTATGAATCAATATTATTCCATTCCAATTCCTTGCCAATATTTCCGTTTCTTTTATGCCTTAA
CCTAGAATTTAACTGCCCAATCACTGAGCTTATCCATGCGGTTATGCACTCTTTGAATAGGAATCTATTTTGTGAAAAATCCCGGCTTTCGTGCTTTGGT
GGGTCTTTGTGATCCTTTCGATGACCTATGTTAAAAAGA