Detailed information on CNT30201723


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9BBT4|YCF3_LOTJA, E-value = 8e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30588877Pisum sativumMusa acuminata4.8549.0890.3134reverse complement
CNT30116375Pisum sativumOryza nivara3.0823.4885.8885reverse complement

Expression of CNT30201723

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MGKNTRIKILVILTRLKSDENNILQPAIH*

>peptide 2 (43 aa)
MVIWVSKIRTRWMFVVPTILVSPDPDKKKGRIFLQSFLLLLIP*

>peptide 3 (43 aa)
MAEYNVKMDFLIKLLYSTVGLEVDLFFFFQKKKQIFSIFFSFN*

>peptide 4 (60 aa)
MDFLIKLLYSTVGLEVDLFFFFSKKNKFFPFFLVSIDCVRLRKWDINGSLFTRFRDIIIM*

>peptide 5 (33 aa)
MFSVTCVDKAYVIKYITSIIGINFQSHSLIIIL*

Sequence

>CNT30201723
AATTCGATTGATTGATACGGGTTGATTTTCTGTTACGAGCAATTGAAGAAACAATAGCCAGTCCGATAGCCGCTTCAGCGGCTGCAATAGCTATAACAAA
AATTGAAAAAATATTTCCTTTTAATTGGCGATTATCAAAAAAATCAGAAAAAGTTACTAGATTTATATTAACTGCATTCAGTATAAGTTCAAGACACATA
AGGGCTCTAACCATATTTCGGCTCGTGATCAATCCATAGATACCAATAGAAAATAAATAGGCACTCAAAACAAGTACATGTTCGAGCATCATTGACCAAC
TCCTTATAAATTTTGATTCATTAACAAATATATCGGCAATAAAAAAAAGAATCTTGATAAAACTCTTTCACTTCACATAGAATTCGACAGAAGTGAATGT
GAGAAAATTGAAAAAAAAGAAAATAATAAAAAGACTGTTCTTATTCAAAACACCCTATGATCTTCAACCAATTTTGTGCCTCAATATAATTACCAGGGGT
AAGGGCTATAGCTTGTTTCCAATATTCGGCAGCTTGATCAAACCAAGATTCTGCAATTTTAGAATCTCCCTGTCGAATGGCCTGTTCTCCGCGGTCGGAA
TAGATCACGACCATATTGTTAAAAGCTTGAGGTAAGAAAGGGTTTCGTTCGAGTGCCCGAAAATAGTATTCCAAAGCTTTTGTATGTTCTCCGTTACTTG
TGTGGATAAGGCCTATGTTATAAAGTATATAACTTCGATTATAGGGATCAATTTCCAGTCGCATAGCCTCATAATAATTCTGTAAAGCTTCCGCATAATT
TCCTTCCGATTGAGCCGACATCCGTTACGGTCGTCACTCGGTTCAAAGAATCTCCGTTCCAGAACCGTGCGTGAGATTGTCATCTCATACGGCTCCTCCT
TTATGTGGATAATGATAAACATCCATGGAATCAAAAAAGATTGCAATATTCTCATTATCAACTGAGCGGGACTAGTGTTTTTACACGAAATCTCTAGTGC
TCCTCCTTTATGTGGATAATGATAAACATCCATGGAATCAAAAAAGATTGCAATATTCTCATTATCAACTGAGCGGGACTAGTGTTTTTACACGAAATCT
CTAGCCAACCTTTCTGTAAAGGATCCTTTATTAACATTTAGTAAGTTATTACTGGATAAATAGTAACTTCAACAATTTCTTTGTCCTCAACGCCGCTTAA
TTTCCCGGAATTAGTCACTTCAACAGTCTTCGATGGTTATATGGGTATCCAAAATTCGAACGAGATGGATGTTTGTTGTCCCAACCATTCTAGTTAGTCC
CGATCCCGATAAGAAGAAAGGAAGGATTTTTTTACAAAGTTTTCTCCTGTTGTTGATTCCCTAGCGTAGTGCTTCTTCCCCCATTCCCCCTATTGGTACT
AGTGGAGTAGGATTCACCTAACCCCATAGGTATATATAGGTATAACCTTTCGCTTAATACTACCTAAAATTGAAGCATATTGAGGCTGCATTAATCGGGA
ATACACGACAGAATGTAGGATTCACCTAACCCCATAGGTATATATAGGTATAACCTTTCGCTTAATACTACCTAAAATTGAAGCATATTGAGGCTGCATT
AATCGGGAATACACGACAGAAGGGATTAATCGTTTTTTTTAATTCCAAACTTCACCTTCAGCAAGCGTAGGTTTTTTTTTTCCATTTTTTTTTTATTTGT
CTCTGAAGTCGGTAAAAAAAAATAATCAAATCGCACCATCTCTGTAATAAGTGAATGCCTCTTTTTCTCCAGGAGTTGTCGGAATTATTCGTAATAAGAT
ATTGGCTACAATGGTAAAGGTCTTATCAATAAAATTTCCATTTATCCTAGATCTAGTCATAGGTATCCATTCTATAATTTCATTTTTTATCGCGTGATAA
AAAATTCCCCAAACAAAGGAATTGTACAATACAGTACGAAATAACGTAAAAATGGACTTCTTAATCAAATTACTTTATTCTACGGTAGGCCTTGAAGTAG
ATTTGTTTTTTTTTTTTTCAAAAAAAAACAAATTTTTTCCATTTTTTTTAGTTTCAATTGATTGTGTGCGCCTACGCAAATGGGATATAAATGGCTCACT
ATTCACTCGGTTTAGGGACATAATCATTATGTAGGAGAGATGGCCGAGTATAACGTAAAAATGGACTTCTTAATCAAATTACTTTATTCTACGGTAGGCC
TTGAAGTAGATTTGTTTTTTTTTTTTCAAAAAAAAAAACAAATTTTTTCCATTTTTTTTAGTTTCAATTGATTGTGGGCGCCTACGCAAATGGGATATAA
ATGGCTCACTATTCACTCGGTTTAGGGACATAATCATTATGTAGGAGAGATGGCCGAGTGGTTCAAGGCGTAGCATTGGAACTGCTATGTAGGCTTTTTG
TTTACTGAGGGTTCGAATCCCTCTCTTTCCGCACCCTTACCAAATTCATCAATGTTACTGACCTCAATGTTTGAAATAATAATAGATAACATTATTGCAA
CTTTGATATGCATTCTCTATTCCTAATTTGTTTCAGTAATTAATATAGAAAATTGTGGATCAAGTGGGTAAGGAATAACACTTTTCCTACACCCACTTCT
ATACACGAATGGGGAAAAATACTCGGATCAAAATTCTTGTTATTTTAACGAGGCTTAAGTCTGACGAGAATAATATTCTACAACCAGCAATTCATTAATT
TCCAAACCAACCCATTTACTATCTATTATTTGCTTGACTAATCCTTTATATTGGAATGGAAGAA