Detailed information on CNT30201416


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30270085Pisum sativumChenopodium quinoa21.072.787.363reverse complement
CNT3085543Pisum sativumVigna radiata39.822.5889.92119reverse complement
CNT30143656Pisum sativumMedicago truncatula55.521586.14166forward
CNT30612419Pisum sativumArabis alpina21.430.1985.9464forward
CNT30598088Pisum sativumFraxinus excelsior25.7514.2388.3177reverse complement
CNT30622437Pisum sativumCajanus cajan21.44.1889.0664reverse complement
CNT30642420Pisum sativumCannabis sativa40.4752.6185.12121forward
CNT30175873Pisum sativumVigna angularis39.831.1587.39119reverse complement

Expression of CNT30201416

Peptides detected in this lncRNA

>peptide 1 (85 aa)
CNTPNCFQDYRLTPQTNTGLFSMLFPHSHAFRETSQKVTHPNTTPSQARLTMEFLLVRLPKRRCLLSEKLPRRSPIPILLQVKHA*

>peptide 2 (36 aa)
MLAFRETSQKVTHPNTTPSQARLTMEFLLVRLPKRRC

Sequence

>CNT30201416
TGTAACACCCCAAACTGCTTTCAGGATTACCGACTGACCCCACAAACCAACACGGGTCTTTTCAGCATGCTTTTTCCTCACTCACATGCTTTCCGAGAAA
CTTCCCAGAAGGTCACCCATCCCAATACTACTCCAAGTCAAGCACGCTTAACTATGGAGTTCTTATTGGTCAGGCTACCGAAAAGAAGATGCTTGCTTTC
CGAGAAACTTCCCAGAAGGTCACCCATCCCAATACTACTCCAAGTCAAGCACGCTTAACTATGGAGTTCTTATTGGTCAGGCTACCGAAAAGAAGATGC