CANTATAdb - search

Detailed information on CNT30201272

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30550263	Pisum sativum	Ipomoea triloba	32.97	2.38	85.45	275	forward

Expression of CNT30201272

Peptides detected in this lncRNA

>peptide 1 (30 aa)
HLCLESLPTNRNSYLYCLSNPKIIIRGGVL*

>peptide 2 (31 aa)
ISVLKASLQIGIRISTAYPTRRLLFVVECFE*

>peptide 3 (29 aa)
MMSQCKKNSFIGAWLFIESKSYQRIEVPI*

Sequence

>CNT30201272
CATCTCTGTCTTGAAAGCCTCCCTACAAATAGGAATTCGTATCTCTACTGCCTATCCAACCCGAAGATTATTATTCGTGGTGGAGTGCTTTGAGTAGGAT
CCGACCCCATCCCAGCAGTCAAATCCCTTCCTTACCCGAATCACCTTCCTCTGAAGCTGGCTGGAATGCCTTTCTAGAGGAGGCTATCCGAGGAATCGAT
AAGTTTGAAGTGGGATATGGAATGGATTGGTGATGGATGGTGGTTATGAAATAAGTTCCGCATCAGATGATGAGCCAGTGCAAAAAAAATTCTTTTATTG
GCGCCTGGCTATTCATTGAGTCGAAATCCTACCAACGCATAGAGGTTCCGATTTGAGAGAGAGCCCAAACGGGGGAGGCGAGAACGTCTTGATCAAAAGC
TCCACTATTCTGAATAATGAAAAAGACTTTTCAGAATTTGATCAAATCGATCGAGAATCTTATCATCTGTTAGGTAGGCCAACCGACCGACCGAGTTTTG
TTGGGCGTCCATTTCACAGAACCTATGTTCTAGCCAAGAATCCCATTATTGATCGAATCAGGGCCAATTCATTGGCAAATGAAAAATATATTGTTTTAAC
ACTCAGAAAACAACCTAAAAAATAGAAAAAAAGAAGAGTAACTAAGACAAGAGCTAGGTAAGCAAGATGGAGAGGCTAGAAAAGGCGGGACAAGAGGATC
TCCATCTTTAGGAAGATTGTGTCCAGGATCTAGTAATCTAAGTTCTGGTCTGCTCATATTAGCCTGTGCTTTATTACAGGTAGTAATTCCCTTCGTTCCT
TTAGTCTTTTCAACGGTACTTGAATCTTAAGTCG