CANTATAdb - search

Detailed information on CNT30201085

BLAST search results

BLAST vs Swiss-Prot:
sp|Q2PMU4|YCF3_SOYBN, E-value = 3e-79

BLAST vs NONCODE:
NONTPRT004570, E-value = 3e-94

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30529029	Pisum sativum	Eucalyptus grandis	20.54	20.26	89.16	415	forward
CNT3020650	Pisum sativum	Citrullus lanatus	23.47	27.24	91.56	474	forward
CNT30730408	Pisum sativum	Corchorus capsularis	21.98	93.87	92.12	444	forward
CNT3047566	Pisum sativum	Prunus dulcis	20.64	21.62	92.33	417	forward
CNT30194121	Pisum sativum	Secale cereale	21.83	49.27	90.7	441	forward
CNT30589320	Pisum sativum	Musa acuminata	6.49	26.95	90.84	131	forward
CNT30510815	Pisum sativum	Solanum lycopersicum	11.88	50.31	87.92	240	forward
CNT30445979	Pisum sativum	Saccharum spontaneum	18.02	92.62	91.21	364	forward
CNT3017916	Pisum sativum	Zea mays	21.83	21.39	90.25	441	forward
CNT30232528	Pisum sativum	Ananas comosus	21.98	22.44	91.22	444	forward
CNT30655373	Pisum sativum	Rosa chinensis	27.97	13.49	91.33	565	forward
CNT30627898	Pisum sativum	Daucus carota	27.72	18.19	90.36	560	forward
CNT30360010	Pisum sativum	Lactuca sativa	10.64	20.02	90.23	215	forward
CNT3022800	Pisum sativum	Populus trichocarpa	16.83	100	90.29	340	forward
CNT30149145	Pisum sativum	Brachypodium distachyon	21.83	24.55	90.02	441	forward
CNT30103542	Pisum sativum	Oryza rufipogon	17.67	50.35	91.32	357	forward

Expression of CNT30201085

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MFSVTCVDKAYVIKYITSIIGINFQSHSLIIIL*

Sequence

>CNT30201085
CTGAGCCGCTAAAGTGGCTAAAGTAGTTATAAATCCTGTTAGTAAAATGGGTCCTATAGAGAGTCCATCTATTCCTAATCTCCAGTCAAAATCAAAAAAA
TGGATCCATTTATAATTCTCCGTCAGTTGAATTAGTGGATCATCCAATTGGAAATGATAAGAAAATGCATAGGTTGTTAGAAGGAGATCGATTAAGCATA
TACAAATGCTATACCACCTAATTACCTTATTTCCCCTATGAGGAAATAAGAAAATTAAGGAACCTGCGGCTATTGGCAAAACAACAACGATTGTTAACCA
AGGAAAATAATTCGTGATAAAAATAAGATACACTTGGGCCAGAAAAGCCCGTGCTCAAAATAGAAAAAAAAGATTTTCTATTTTATTTGGAGCACGAGTT
TTTGCCAGTAAAAAACGTATTCGTGTGGTGTTGTTTGAAACGAATCAATAAGCTAGACCCATACTTCGAGTTGTTTCATGCCATAAATAAACTCGAACAC
TTAAGAAATCCGTCGGACAAGCGGACTCACACCTCTTACAACCAACACAGTCCTCTGTTCTTGGGGCAGAAGCTATTTGCTTAGCTTTACATCCACCCCA
AGGTATCATTTCTAATACATCTGTGGGACAGGCTCGGACACATTGAGTACATCCTATACATGTATCATAAATCTTTACTGAATGTGACATTATATCTATA
GTAATTGTTGATGTTCAAAAATGAAAATTATTGATCTAGTAAACTCGTAAATGAATCGTATATTTATATACCAGATGAATCAATGATTTGTGATAATATT
GTTAACTGTTAATAAAAAAAGGTGTCTAGATAAATTTAGAAGAGGGAATAGAAGAGGACCAGGATACTTTGATTTCTTATGATTTAGGCAATCCAAACAT
GATATGATCATAAGTTGTGTCGAATAAATACTCAAATGAATTGATTAATATTTCACTATGTGAAATTCGACTTTATTATTAATTATGATAGGATTAATGC
TATTTATTCAACAAATTCGATTGATTGATACGGGTTGATTTTCTGTTACGAGCAATTGAAGAAACAATAGCCAGTCCGATAGCCGCTTCAGCGGCTGCAA
TAGCTATAACAAAAATTGAAAAAATATTTCCTTTTAATTGGCGATTATCAAAAAAATCAGAAAAAGTTACTAGATTTATATTAACTGCATTCAGTATAAG
TTCAAGACACATAAGGGCTCTAACCATATTTCGGCTCGTGATCAATCCATAGATACCAATAGAAAATAAATAGGCACTCAAAACAAGTACATGTTCGAGC
ATCATTGACCAACTCCTTATAAATTTTGATTCATTAACAAATATATCGGCAATAAAAAAAAGAATCTTGATAAAACTCTTTCACTTCACATAGAATTCGA
CAGAAATGAATGTGATAAAATTGAAAAAAAAAAAAGAAAATAATAAAAAGACTGTTCTTATTCAAAACGCCCTGTGATCTTCAACCAATTTTGTGCCTCA
ATATAATTACCAGGGGTAAGGGCTATAGCTTGTTTCCAATATTCAGCAGCTTGATCAAACCAAGATTCTGCAATTTCAGAATCTCCCTGTCGAATGGCCT
ATAGTCGCACGTAATGACAGATCACGGCCATATTGTTAAAAGCTTGAGGTAAGAAAGGGTTTCGTTCGAGTGCCCGAAAATAGTATTCCAAAGCTTTTGT
ATGTTCTCCGTTACTTGTGTGGATAAGGCCTATGTTATAAAGTATATAACTTCGATCATAGGGATCAATTTCCAGTCGCATAGCCTCATAATAATTCTGT
AAAGCTTCCGCATAATTTCCTTCCGATTGAGCCGACATCCGTTACGGTCGTCACTCGGTTCAAAGAATCTCCGTTCCAGAACCGTACGTGAGATTGTCAT
CTCATACGGCTCCTCCTTTATGTGGATAATGATAAACATCCATGGAATCAAAAAAGATTGCAATATTCTCATTATCAACTGAGCGGGACTAGTGTTTTTA
CACGAAATCTCTAGCCAGAG