CANTATAdb - search

Detailed information on CNT30200737

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3090854	Pisum sativum	Solanum tuberosum	33.27	34.22	94.05	168	forward

Expression of CNT30200737

Peptides detected in this lncRNA

>peptide 1 (75 aa)
LYICLLRYKRSAPKQGMVGASNFHLLGVGAEKSSLYRLGLLGFDAYLIIIKRGRFDKGAFKPFCWIFGLQPRPIE*

>peptide 2 (30 aa)
MLTLLLLKGEGLIKELLSPFAGFLVCSPAL*

>peptide 3 (29 aa)
IYMFASIQEIGPEARYGGCQQLSLVGSRG*

Sequence

>CNT30200737
TTATATATATGTTTGCTTCGATACAAGAGATCGGCCCCGAAGCAAGGTATGGTGGGTGCCAGCAACTTTCACTTGTTGGGAGTAGGGGCTGAAAAAAGCT
CTTTGTATAGGTTGGGTTTGTTGGGCTTTGATGCTTACCTTATTATTATTAAAAGGGGAAGGTTTGATAAAGGAGCTTTTAAGCCCTTTTGCTGGATTTT
TGGTCTGCAGCCCCGCCCTATAGAATGAATCAAATAAGGAGAGGCGACTGAGCCACTCTTATACTACTCCTTACCTCACCCCCTTCTCACTCACTTAAAG
GGCGAAGTTGCTGAAGCGAGTCTAAAGGCCAAAGAGTGGTCTTTGAACGTTACTACGTATCCTTATTAATTCATAGGTATAGTGTAAGGTAGGTTTGTTT
GGGTATAGCAGGACTTGAACCTGCGACCATTAGGTTAAAAGCCCAATGCTCTACCAACTGAGCTATACACTCCATATATATATATATAGTCGTAAATAAA
GATTG