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Detailed information on CNT30200640


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9BBS9|RPOB_LOTJA, E-value = 3e-74

BLAST vs NONCODE:
NONMEST001055, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019361Pisum sativumCitrullus lanatus38.2979.3490.08242forward
CNT3057109Pisum sativumAmborella trichopoda30.78.6588.66194forward

Expression of CNT30200640

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MSNTESLEGPNLHFTYPLSSLFGPSFKGLLCNKCIMSTGTSMYFIINLMN*

Sequence

>CNT30200640
CGATAATTTCCACAAGCACAAATTCCACTTTTTATAGGCCCAAAAATTCTTTCACAAAATAATCCATCTTTTTCAGGCTTATTGGTTTTATAATGAAGAG
TATAGGGTTTTGTTACCTCCCCAACCGTTTCTCCATTGGGTAGGATTTTTTTTGCCCAAGCACTTATTTGTTCAGGAGAAACTGATCCAATTCGAAGGTG
TTGATGTTTATACTGATCAATCATAAAATAAAATTTCCGATTAAGTCCAATTAACCTTCCTTCCTTTGAATCTGAAAGTCTTTCTCAGATACAAGGAAAT
GATTCAGTTCCAGAGCCAAAGATCGTAGTTCGCGAACGAGCAATCGAAAGGATTCTGGAGCATCCACAGGTTTCGGAATTGTTCCTCCAATAATTGTAGT
TCCAAGTACTTCTTGACGAGCTTTAATATGATCAGATTTATAAGTAAGCATCTCTTGTAAAATATGAGCAACACCGAATCCCTCGAGGGCCCAAACCTCC
ATTTCACCTACCCGTTGTCCTCCTTGTTTGGCCCTTCCTTTAAGGGGTTGTTGTGTAACAAGTGCATAATGTCCACTGGAACGTCCATGTATTTTATCAT
CAACTTGATGAATTAATTTCAAGATATAAGGC