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Detailed information on CNT30200636


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 3e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701193Pisum sativumQuercus lobata43.5316.0484.16202forward
CNT30542600Pisum sativumBrassica napus35.9923.5586.83167forward
CNT30234848Pisum sativumBrassica oleracea35.9925.9786.83167forward
CNT30171121Pisum sativumTrifolium pratense41.1621.7588.48191forward
CNT30611387Pisum sativumArabis alpina35.9960.9585.63167forward

Expression of CNT30200636

Peptides detected in this lncRNA

>peptide 1 (34 aa)
LRKFLVRLSVFKIICSISCYDSLPITNLKHKFQT*

>peptide 2 (31 aa)
MANLPFLSSFTFSNSANASGSSAKPNGSNIQP

>peptide 3 (46 aa)
MHTHMIMIMIIIHIELGRKLLSQKHINIRVLIFREQSWWHRTMHCC*

Sequence

>CNT30200636
TTAAGAAAATTCCTAGTTAGGCTATCGGTCTTTAAAATCATTTGCTCAATCTCATGTTATGATAGTCTACCGATAACAAACCTGAAGCATAAGTTTCAAA
CTTAGTAAAAAGTGAATAGCTCCTCATGTTAGTCCACCTATGCATACACACATGATAATGATAATGATAATAATTCACATTGAATTGGGAAGAAAATTAC
TATCACAAAAACATATAAATATAAGAGTGCTTATTTTCCGGGAACAAAGTTGGTGGCATAGGACCATGCATTGTTGTTGACTGGGTCTGCAAGATGATCA
GCAAGGTTTTCCAAAGGACCCTTTCCAGTTACAATAGCTTGAACGAAGAATCCAAACATTGAGAACATGGCTAATCTACCGTTCTTGAGTTCCTTCACCT
TTTCCAATTCTGCGAATGCTTCTGGATCATCAGCTAAGCCCAATGGATCAAACATTCAACCTTA