CANTATAdb - search

Detailed information on CNT30200521

BLAST search results

BLAST vs Swiss-Prot:
sp|Q1S9I9|H2B1_MEDTR, E-value = 3e-43

BLAST vs NONCODE:
NONTPRT005013, E-value = 5e-130

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30381273	Pisum sativum	Manihot esculenta	30.32	49.86	83.15	178	forward
CNT30433262	Pisum sativum	Papaver somniferum	46.68	38.48	86.5	274	forward
CNT30724478	Pisum sativum	Lupinus angustifolius	46.34	45.11	83.46	272	forward

Expression of CNT30200521

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MSLMKLFMIPMALLEIPMSGVNLLQNFEDVDLVCLHALLVSLLLLVSGGGTAILRQLLPGLWLLLGGSLLGNRRLLLLHWFLLRRLLLSLWRH*

Sequence

>CNT30200521
GGCATGTTTAAGCACTGGTAAACTTGGTTACAGCTTTTGTACCCTCGGAGACAGCATGCTTGGCCAATTCACCAGGTAGAACAAGCCTGACCGCAGTTTG
AATTTCCCTTGAAGTTATTGTTGGCTTCTTGTTGTACCTTGCAAGTCTTGAAGATTCAGCAGCAAGCTTCTCGAAGATGTCGTTAATGAAACTGTTCATG
ATTCCCATGGCCTTGCTTGAGATACCAATGTCAGGGGTGAACTTGCTTCAGAACTTTGAAGATGTAGATCTTGTATGTCTCCACGCTCTTCTTGTTTCTC
TTCTTCTTCTTGTCTCCGGCGGCGGCACCGCCATCCTTAGGCAGCTTCTTCCCGGCCTTTGGCTTCTTCTCGGCGGGAGTCTTCTCGGCAACCGTCGACT
TCTTCTCCTCCACTGGTTTCTTCTCCGCCGGCTTCTTCTCTCCCTTTGGCGCCATTGAAATGGATTGGGAAACTTGGAAATTTGATAAAAGTTAGGGTTT
CGATTTGGGAATTGATAAACAGATGAAGGAAGTTATGATGTTAAACGAAGCGGTGTGATTAATATATAAGATGGTTTTCATGTTTCT