Detailed information on CNT30200456


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT005173, E-value = 1e-37

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30404043Pisum sativumBeta vulgaris58.6921.1283.69233forward
CNT30628831Pisum sativumVigna unguiculata63.4835.5985.71252forward
CNT30235237Pisum sativumBrassica oleracea57.1840.984.58227forward
CNT30173253Pisum sativumTrifolium pratense57.6826.9186.9229forward
CNT30610069Pisum sativumGossypium raimondii55.6750.1184.62221forward
CNT30417231Pisum sativumPapaver somniferum44.3323.6688.07176forward

Expression of CNT30200456

Peptides detected in this lncRNA

>peptide 1 (30 aa)
WHGHCTLCSRKINTLIFICFCDSNLLPNSM*

>peptide 2 (42 aa)
MANLPFLSSSPSILRMLLDHQLSPMDQSFHLGKVDQPPHREAH

Sequence

>CNT30200456
TGGCATGGTCATTGCACACTTTGTTCCCGGAAAATAAACACTCTTATATTTATATGTTTTTGTGATAGTAATCTTCTTCCCAATTCAATGTGAATTATTA
TCATTATCATTAAAACATATAAATATAGAGTGTTTATTTTCCGGAACAAAGTTGGTGGCATATGACCATGCATTGTTGTTGACTGGGTCTGCAAGATGAT
CAGCAAGGTTCTCCAAAGGACCCTTTCCAGTTACAATAGCTTGAACGAAGAATCCAAACATTGAGAACATGGCTAATCTACCGTTCTTGAGTTCTTCACC
TTCAATTCTGCGAATGCTTCTGGATCATCAGCTAAGCCCAATGGATCAAAGCTTCCACCTGGGTAAAGTGGATCAACCACCTCACCGAGAGGCCCAC