CANTATAdb - search

Detailed information on CNT30200381

BLAST search results

BLAST vs Swiss-Prot:
sp|Q41011|EF1A_PEA, E-value = 1e-56

BLAST vs NONCODE:
NONGMAT001703, E-value = 5e-62

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3053016	Pisum sativum	Amborella trichopoda	45.17	28.42	83.97	262	forward

Expression of CNT30200381

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MSLTANRPRGGYSEKVSTTMGLVGIILIIPASPFFRNLGSFSISLPERLSILVISSANLTAMWEVWQSSDQ*

>peptide 2 (50 aa)
MANDHNVNMNLFLTHLCLSLKLHKICQKKHVKPPLPHRRSTVSTHDTTHK*

Sequence

>CNT30200381
GTTTATCATAATAACAACAATGGACTTCCCTGGATGAACCATCCTGCACATTTCATTTCTTCTTGAGTGCTGACTTGGTAATCTTAGATGCACTTGGATC
CTTCTTCTCCACACCCTTGATGACTCCAACAGCCACAGTTTGACGCATGTCTCTGACAGCAAATCGTCCGAGAGGAGGATATTCAGAGAAAGTCTCAACC
ACCATGGGCTTGGTGGGAATCATCTTAATAATACCAGCATCACCATTCTTTAGGAATTTGGGCTCCTTCTCAATCTCTTTACCAGAACGTCTGTCAATCT
TGGTAATAAGCTCGGCAAACTTGACAGCAATGTGGGAGGTGTGGCAATCAAGTGACCAGTAGTAGTTGACTTCCCAGAGTCGACATGGCCAATGACCACA
ATGTTAATATGAACCTTTTCCTTACCCATCTGTGCTTAAGCTTAAAATTACACAAGATCTGCCAAAAAAAACACGTAAAACCACCATTACCACACAGAAG
ATCTACCGTTTCAACACATGACACAACACATAAATAAAAATACTAGCCACAAAACTATTCTAACAAACCAAATTTGCATA