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Detailed information on CNT30200358

BLAST search results

BLAST vs Swiss-Prot:
sp|P68430|H32_ONOVI, E-value = 3e-91

BLAST vs NONCODE:
NONATHT004002, E-value = 1e-44

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30697930	Pisum sativum	Oryza sativa	16.56	23.62	84.47	103	forward
CNT30674998	Pisum sativum	Setaria viridis	23.95	39.21	84.56	149	forward
CNT30519871	Pisum sativum	Setaria italica	55.79	52.42	82.42	347	forward
CNT30700039	Pisum sativum	Quercus lobata	57.56	73.21	85.47	358	forward
CNT30376827	Pisum sativum	Arabidopsis thaliana	20.1	52.97	81.6	125	forward
CNT30279437	Pisum sativum	Chenopodium quinoa	52.57	42.69	82.57	327	forward
CNT3069242	Pisum sativum	Quercus suber	64.79	75.19	83.13	403	forward
CNT30380641	Pisum sativum	Manihot esculenta	60.29	54.27	80.53	375	forward
CNT30628401	Pisum sativum	Vigna unguiculata	12.86	23.81	83.75	80	forward
CNT3048083	Pisum sativum	Prunus dulcis	61.9	54.84	81.56	385	forward
CNT30177168	Pisum sativum	Secale cereale	57.23	47.91	83.99	356	forward
CNT30284356	Pisum sativum	Triticum aestivum	56.75	54.73	83	353	forward
CNT30220094	Pisum sativum	Hordeum vulgare	51.93	56.27	82.35	323	forward
CNT30398097	Pisum sativum	Triticum turgidum	61.9	50.33	83.12	385	forward
CNT30591253	Pisum sativum	Musa acuminata	11.9	23.72	85.14	74	forward
CNT30443502	Pisum sativum	Aegilops tauschii	46.46	46.69	81.66	289	forward
CNT30240007	Pisum sativum	Avena sativa	53.38	59.18	85.24	332	forward
CNT30655661	Pisum sativum	Triticum dicoccoides	56.75	65.25	83	353	forward
CNT30613891	Pisum sativum	Arabis alpina	30.87	47.64	84.38	192	forward
CNT30474628	Pisum sativum	Saccharum spontaneum	37.46	19.6	83.69	233	forward
CNT30141394	Pisum sativum	Lolium perenne	57.72	56.01	83.29	359	forward
CNT306284	Pisum sativum	Zea mays	18.01	52.34	85.71	112	forward
CNT30686633	Pisum sativum	Triticum urartu	10.93	24.55	86.76	68	reverse complement
CNT30719851	Pisum sativum	Triticum spelta	56.75	49.16	83.29	353	forward
CNT30368649	Pisum sativum	Sorghum bicolor	35.85	53.1	80.72	223	forward
CNT30622400	Pisum sativum	Cajanus cajan	63.83	43.39	83.63	397	forward
CNT30596421	Pisum sativum	Oryza meridionalis	20.58	18.23	83.59	128	forward
CNT30154413	Pisum sativum	Prunus persica	17.2	27.65	85.05	107	forward
CNT30414942	Pisum sativum	Papaver somniferum	60.45	46.25	83.24	376	forward
CNT30329187	Pisum sativum	Dioscorea rotundata	22.35	35.82	82.01	139	forward
CNT30148402	Pisum sativum	Brachypodium distachyon	22.03	27.9	82.48	137	forward
CNT3099660	Pisum sativum	Oryza rufipogon	21.54	29.58	86.57	134	forward
CNT30585391	Pisum sativum	Echinochloa crusgalli	57.23	54.69	83.43	356	forward
CNT3018856	Pisum sativum	Cyanidioschyzon merolae	11.41	30.87	85.92	71	forward

Expression of CNT30200358

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MIHFIDKALSTITILQYLILKKLKPTVCD*

>peptide 2 (40 aa)
MWLLHSSGGWSRLASGFGCQLLPWGFAAGGLASSLLGPCH*

Sequence

>CNT30200358
TTAATTATGGCAAACTAATAAATTTCAACGAACAATAGTTGAACAAAAGATGATTCATTTCATTGATAAGGCGCTAAGCACAATCACAATATTACAATAT
TTGATTCTCAAGAAATTGAAACCAACGGTCTGTGATTAACACATTGAAAATATCTACACAAACCCTAAAAGCAAGAATTGAGAAAATCAAGCACGCTCGC
CTCTAATACGCCTAGCGAGCTGGATATCCTTAGGCATGATAGTGACACGCTTGGCGTGAATTGCACAGAGATTTGTGTCCTCAAAGAGTCCAACGAGGTA
AGCCTCGGCTGCTTCCTGGAGTGCTGACACGGCGGAGCTCTGGAAACGGAGGTCAGTCTTGAAATCTTGAGCGATCTCACGAACAAGACGCTGGAAAGGA
AGTTTGCGGATCAAAAGCTCAGTACTCTTCTGGTACTTGCGGATCTCACGGAGAGCGACGGTTCCTGGCCTGAAACGATGTGGCTTCTTCACTCCTCCGG
TGGCTGGAGCAGACTTGCGAGCGGCTTTGGTTGCCAGTTGCTTCCTTGGGGCTTTGCCGCCGGTGGACTTGCGAGCAGTTTGCTTGGTCCGTGCCATTGA
AAGATAACAGAAAACGGTTACT