« Back to Pisum sativum search


Detailed information on CNT30200315


BLAST search results

BLAST vs Swiss-Prot:
sp|P35007|SAHH_CATRO, E-value = 9e-76

BLAST vs NONCODE:
NONBRAT004190, E-value = 5e-65

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675638Pisum sativumSetaria viridis19.9620.8589.32103forward
CNT30517189Pisum sativumJuglans regia26.3634.9684.56136forward
CNT30702258Pisum sativumQuercus lobata39.5343.485.29204forward
CNT30375086Pisum sativumArabidopsis thaliana68.9949.6584.27356forward
CNT30619260Pisum sativumSesamum indicum67.6432.7786.25349forward
CNT3020603Pisum sativumCitrullus lanatus68.4122.886.69353forward
CNT3072357Pisum sativumQuercus suber67.6433.9885.1349forward
CNT30380227Pisum sativumManihot esculenta21.927.193.81113forward
CNT30402445Pisum sativumBeta vulgaris51.3659.6882.64265forward
CNT30628366Pisum sativumVigna unguiculata31.7811.4890.24164forward
CNT30505192Pisum sativumNicotiana attenuata32.3629.5688.62167forward
CNT30709695Pisum sativumGlycine max35.4754.7987.43183forward
CNT30543653Pisum sativumBrassica napus26.5519.8686.13137forward
CNT3076654Pisum sativumBrassica juncea52.7158.2484.56272forward
CNT30261371Pisum sativumBrassica rapa19.3823.9290100forward
CNT30612558Pisum sativumArabis alpina35.6648.8184.24184forward
CNT30607325Pisum sativumGossypium raimondii68.4127.3687.82353forward
CNT30231757Pisum sativumAnanas comosus18.0235.3683.8793forward
CNT30651401Pisum sativumRosa chinensis23.2644.7890.83120forward
CNT30365203Pisum sativumSorghum bicolor31.9876.7486.06165forward
CNT30355186Pisum sativumLactuca sativa58.5341.0383.11302forward
CNT30705212Pisum sativumPrunus avium29.0740.7689.33150forward
CNT30645006Pisum sativumCannabis sativa31.5919.8188.34163forward
CNT3026673Pisum sativumPopulus trichocarpa24.6113.4487.4127forward
CNT30329805Pisum sativumDioscorea rotundata20.5418.0689.62106forward
CNT30103876Pisum sativumOryza rufipogon21.1224.0689.91109forward
CNT30117878Pisum sativumOryza nivara21.1224.2289.91109forward
CNT30723196Pisum sativumLupinus angustifolius62.2140.2888.79321forward

Expression of CNT30200315

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MTWLVKEQDITKLGCPVAHPKFIKRPSAKIMMPVLVSGKTHLSV*

Sequence

>CNT30200315
CTAACATCACAAAAACCTAAAATTCTACAGCCACAATTCTGAAAAAAGTCTAACACCCCAAAATAAGGAAAAATTAAACAATCAAAAGGTTTCATAAAAT
CAATTTTCTTGTCCCTCAATCTCATCACCACCTTGATCACCTTTCAGTACCTGTAGGCAAAACGTAAACCTTCTTTTCATACTTTCCAGATTTCCTCTCA
TTCCACAACTCTAGTTGAGCAATGACCTGGTTGGTGAAAGAGCAGGACATCACAAAACTAGGGTGTCCAGTGGCACATCCCAAGTTCATCAAACGACCCT
CCGCCAAGATAATGATGCCAGTGTTGGTCTCAGGGAAAACCCACCTGTCGGTTTGAGGCTTGATGGTGATACGCTTCACACCAGGGTAGTTCTCAACACC
GGACATATCAATTTCATTGTCAAAGTGACCAATGTTACAAACAATGGCATTGTTCTTCATTTTCTTCATGTCACCAACCATGATGATGTCCTTGTTACCA
GTGGTGGTAACAAAGA