Detailed information on CNT30200101


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30406228Pisum sativumBeta vulgaris17.5398.9187.08271forward
CNT30491922Pisum sativumOlea europaea8.846.988.24136forward
CNT3047375Pisum sativumPrunus dulcis19.6698.3891.78304forward
CNT3090743Pisum sativumSolanum tuberosum27.6895.1190.89428forward
CNT30283847Pisum sativumTriticum aestivum59.8367.7286.92925forward
CNT3068316Pisum sativumLeersia perrieri9.926.4287.58153forward
CNT30414626Pisum sativumPapaver somniferum27.4396.3691.51424forward
CNT30110673Pisum sativumOryza longistaminata7.3742.0788.6114forward
CNT3022114Pisum sativumPopulus trichocarpa19.1546.9888.85296forward
CNT3039143Pisum sativumCucumis melo29.8841.5591.99462forward

Expression of CNT30200101

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MKGAKTKTRDPCKEINEFQIFLANPKKVFQYVHHKRFRDPNRPNAK*

>peptide 2 (57 aa)
MKGITNIPCLHIGSRTGSEGSKTANSYRAIEPAQPATRAVCIIWTESKRPGSFNTTV*

>peptide 3 (57 aa)
TKTTGNVSKKVGIRRTKSSRPSLSLKIGCPNQPTAIPSPLSIEPALNKPPFAGLLPM*

>peptide 4 (73 aa)
MNSKYFWQIQRRFSSTFITKDFEIPIDPMPNSRQKAQARKHNMCRGHTFVTPNTRIRYSASCNIPTTPRIGYS*

>peptide 5 (30 aa)
YQNNRKCFKKSRHTTYKKFTPLFVSKDRMP*

>peptide 6 (33 aa)
MSLLQYDERLFPRNKRIKTIHTPGGIYRLYPSC*

>peptide 7 (30 aa)
MMRGYSPGTKGSKPSTPQAGFTDCTLPVSP*

>peptide 8 (73 aa)
MNSKYFWQIQRRFSSTFITKDFEIPIDPMPNSRQKAQARKHNMCRGHTFVTPNTRIRYSASCNIPTTPRIGYS*

Sequence

>CNT30200101
TTACCAAAACAACCGGAAATGTTTCAAAAAAAGTAGGCATACGACGTACAAAAAGTTCACGCCCCTCTTTGTCTCTAAAGATAGGATGCCCTAACCAACC
AACCGCTATTCCATCTCCATTGTCCATTGAGCCCGCTCTAAACAAACCCCCTTTTGCCGGATTATTACCGATGTAATCATAAAAAGCTAATTTTTCAGGA
ATTTTAGACCAAGCTTCTGATAAACTTTGATTTTCGACTAGCCACCACCAACTCTTCGATATATTTCTTGCTGGAAGTATCCCTGATCCCATTGATAACG
AGTAGACCAAATAATTCAATCGGGGTAGTTGCTGAACCATACCACATAGTTCCAGCAACAACAAAAGCTGCAAAAAATACAGCAGCGATACTACTGGAAA
GGACCGTTTCAATATTTCCCATACCCAATCCTTGTATAAACGTTGAGGTGGACGCACACTAAGATGGAAAAGACCCGCTAATATGCCCAATGTCCCTGCT
GCAATATGATGAGAGGCTATTCCCCCGGAACAAAAGGATCAAAACCATCCACACCCCAGGCGGGATTTACAGATTGTACCCTTCCTGTTAGTCCATAAGG
ATCGGATACCCATATTCCAGGACCAAACAATCCTTACATGAAAGGCGCCAAAACCAAAACACGCGACCCCTGCAAAGAAATAAATGAATTCCAAATATTT
TTGGCAAATCCAAAGAAGGTTTTCCAGTACGTTCATCACAAAAGATTTCGAGATCCCAATAGACCCAATGCCAAATAGCCGCCAAAAAGCACAAGCACGA
AAACACAATATGTGCCGCGGCCACACCTTCGTAACTCCAAATACCCGGATTCGTTATAGTGCCTCCTGTAATATTCCAACCACCCCACGAATTGGTTATT
CCTAAACGAGTCATGAAGGGCGCCAAAACCAAAACACGCGACCCCTGCAAGAAATAAATGAATTCCAAATATTTTTGGCAAATCCAAAGAAGGTTTTCCA
GTACGTTCATCACAAAAGATTTCGAGATCCCAATAGACCCAATGCCAAATAGCCGCCAAAAAGCACAAGCCCGAAAACACAATATGTGCCGCGGCCACAC
CTTCGTAACTCCAAATACCCGGATTCGTTATAGTGCCTCCTGTAATATTCCAACCACCCCACGAATTGGTTATTCCTAAACGAGTCATGAAGGGTATAAC
GAACATACCCTGTCTCCACATTGGGTCAAGAACAGGGTCAGAGGGATCAAAAACTGCTAATTCATATAGAGCCATCGAACCGGCCCAACCAGCAACCAGA
GCTGTATGCATTATATGGACAGAAAGTAAACGGCCGGGATCATTTAATACAACGGTATGAACACGATACCAAGGCAAACCCATGAAAATACCCCTTAATA
TTAACAAAAAATGGACACTATGTAACTTTATTGCACTGTAAAAAACTATGCTATGGACCTCCCCCTTTTAGTAAATTATCTCGCATTAAAGAATTTATAT
TTGTTCTAGTAGAATTGATATTTGTTCTAGTTTTTTAGAAACAAAG