Detailed information on CNT30199988


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8S8X9|RPOB_ATRBE, E-value = 8e-79

BLAST vs NONCODE:
NONMEST001055, E-value = 2e-131

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30101589Pisum sativumOryza rufipogon9051.6684.8342forward

Expression of CNT30199988

Peptides detected in this lncRNA

>peptide 1 (29 aa)
FRYCSSNNCSSKYFLTSFNMIRFISKHLL*

>peptide 2 (50 aa)
MSNTESLEGPNLHFAYPLSSLFGPSFKGLLCNKCIMSTGTSMYFIINLMN*

Sequence

>CNT30199988
GGTTTCGGTATTGTTCCTCCAATAATTGTAGTTCCAAGTACTTCTTGACGAGCTTTAATATGATCAGATTTATAAGTAAGCATCTCTTGTAAAATATGAG
CAACACCGAATCCCTCGAGGGCCCAAACCTCCATTTCGCCTACCCGTTGTCCTCCTTGTTTGGCCCTTCCTTTAAGGGGCTGTTGTGTAACAAGTGCATA
ATGTCCACTGGAACGTCCATGTATTTTATCATCAACTTGATGAATTAATTTCAAGATATAAGGCTTTCCTATTATAACGGGCTGTTCAAAAGCATTCCCT
GTTCTTCCTTCAAATATTCTGCTCTTTCCCGGATACTCGGGTTCAAATATCCATGGATTCGATGTTTGTTTACTGGCCTC