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Detailed information on CNT3019984


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 8e-122

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727322Citrullus lanatusCorchorus capsularis60.5172.2382.14918forward
CNT30200107Citrullus lanatusPisum sativum55.9795.8282.33849forward
CNT30568725Citrullus lanatusActinidia chinensis60.0578.5382.22911forward
CNT30542695Citrullus lanatusBrassica napus57.0955.9881.52866forward
CNT30511508Citrullus lanatusSolanum lycopersicum57.9467.281.8879forward
CNT30172216Citrullus lanatusTrifolium pratense59.252.783.85898forward
CNT30147063Citrullus lanatusMedicago truncatula59.8582.782.49908forward
CNT30423866Citrullus lanatusPapaver somniferum60.1271.3182.35912forward
CNT30120658Citrullus lanatusCitrus clementina60.1290.6682.24912forward
CNT30111644Citrullus lanatusFicus carica60.0563.9382.44911forward

Expression of CNT3019984

Peptides detected in this lncRNA

>peptide 1 (85 aa)
PFSEKYFQFIYLNPLVLYISYRILFSLNCELERTFRNNILEKQKKQKYPKLIPMAANKATHTCQVFPFPEEKFRNHHGDEGQGEG*

>peptide 2 (79 aa)
MKSGFLLNVVIGKGSPIFQLLSGKYQSLLVWGDTFLILDLGLHVINSVGRLHLKGDGLSGKGLDEDLHATTEPEHEVKS*

>peptide 3 (41 aa)
MVSEDSTSRVMVLPVRVLTKICIYTERNRDIRFSIPSQQTG*

>peptide 4 (48 aa)
MESRLLLDVVICKSSAIFQLFPSKDESLLVWGNTFLVLNLGLHVVNCV*

>peptide 5 (30 aa)
MVFPVRVLTKICIPPLRRRTRWRVDSFWML*

Sequence

>CNT3019984
CCATTCTCAGAGAAGTACTTCCAATTTATTTATCTGAACCCACTAGTATTATACATATCATATAGAATACTGTTCTCCCTAAATTGCGAACTTGAGAGAA
CATTTAGAAACAACATACTTGAAAAGCAAAAGAAACAGAAGTATCCCAAACTCATTCCCATGGCCGCAAACAAGGCCACCCACACATGCCAAGTTTTCCC
ATTTCCAGAAGAAAAGTTCAGAAACCACCACGGAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCTT
CTAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGAATTTTTGCCTTCACATTGTCGATTGTATCAGAACTCTC
CACCTCCAAAGTGATGGTCTTCCCCGTCAGGGTCTTAACAAAGATCTGCATTCCTCCCCTCAGACGAAGGACAAGATGGAGAGTAGACTCCTTCTGGATG
TTGTAATCTGCAAGAGTTCGGCCATCTTCCAATTGTTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCT
TCACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAAATTTGCATGCCACCGCGGAGACGGAGGAC
AAGATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCAAGGGTTCGCCCATCTTCCAACTGCTTTCCGGCAAATATCAATCTCTGCTGGTCTGGGGGG
ATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTATCAATAGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGA
TTTGCATGCCACCACGGAGCCGGAGCACGAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGC
GAAGATCAAACGTTGCTGATCCGGGGGGATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATG
GTCTTGCCTGTGAGGGTTTTAACGAAGATTTGCATCTATACAGAACGAAACAGAGATATCAGATTCTCAATTCCATCTCAACAAACTGGGTAAACAGATC
AGAATTACATAGTTTAAACCTAAATTCTATTTCTTTAAATCAGAATCGTACTGTTGAAAACCTAATTGAAGATTTCATACCATCAGAAAAATCCCAATTT
TCCAGGCAACCACGTAAAAACTTAGCAAAACCCAGAGATATGACAACAATCATAAACTTTAATTCGATCAAAGAGCAGATCTAGCCACAAAATCTCAAGT
ACCCTACAAGGATGCTCAGTTCTATAATTCACACAACTGAGAGCATCTCAAACGGAATTCTCTATTCAAAATCCTAAACATTTCATCTCTCAAGGCCAAA
CAACATGATCAAACAAG