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Detailed information on CNT3019970


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675843Citrullus lanatusSetaria viridis26.9719.4886.5982forward
CNT30517898Citrullus lanatusJuglans regia42.1114.1483.59128forward
CNT30378101Citrullus lanatusArabidopsis thaliana56.2519.3986.55171forward
CNT30282434Citrullus lanatusChenopodium quinoa32.243.9987.7698forward
CNT30402788Citrullus lanatusBeta vulgaris50.9912.3282.58155forward
CNT30631057Citrullus lanatusVigna unguiculata53.2919.0482.1162forward
CNT30711421Citrullus lanatusGlycine max44.0846.6986.57134forward
CNT30158908Citrullus lanatusPistacia vera50.999.4984.52155forward
CNT30298345Citrullus lanatusTriticum aestivum53.2923.0182.72162forward
CNT30560521Citrullus lanatusActinidia chinensis53.2922.5383.33162forward
CNT30652736Citrullus lanatusRosa chinensis24.3412.7887.8474forward
CNT30625469Citrullus lanatusDaucus carota49.3410.0386.67150forward
CNT30481150Citrullus lanatusChara braunii38.168.2182.76116forward
CNT30103353Citrullus lanatusOryza rufipogon5015.1488.16152forward

Expression of CNT3019970

Peptides detected in this lncRNA

>peptide 1 (46 aa)
PRTSPSKLPSSSFHLHSHQPLELLLQSFLLLLFIFTLIKFQTFLGC*

>peptide 2 (57 aa)
LELLLQSFLLLLFIFTLINPSNFSFKASFFFFSSSLSSSFRPSLVADTSFLPSNSFN*

>peptide 3 (69 aa)
PSNFSFKASFFFFSSSLSSTPRTSPSKLPSSSFHLHSHQVSDLPWLLTQASCLQIPSTDQLRTHRLHQP*

Sequence

>CNT3019970
CCCTCGAACTTCTCCTTCAAAGCTTCCTTCTTCTTCTTTTCATCTTCACTCTCATCAACCCCTCGAACTTCTCCTTCAAAGCTTCCTTCTTCTTCTTTTC
ATCTTCACTCTCATCAAGTTTCAGACCTTCCTTGGTTGCTGACACAAGCTTCTTGCCTTCAAATTCCTTCAACTGACCAACTGCGTACTCATCGATTGCA
TCAACCATGAACAGAACTTCGTAACCCTTCTTCTTGAGCTTCTCAAGGAAAGGAGAATTTTCAACAGCTTTCTTGCTTTCACCAGTGATGTAAAAGATAT
CATT