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Detailed information on CNT30199626


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0JEP3|BURP5_ORYSJ, E-value = 4e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3095535Pisum sativumSolanum tuberosum23.0941.4882.12151forward

Expression of CNT30199626

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MILWKEVTNRNSSRLNIKHLKSQMVMTPLCCLSVTNSNSFNSISINTFQNHRINFCFICFMTVKNCIWIIHFMAHNTFVLLSQSLHSFSYHIFL*

>peptide 2 (32 aa)
MDETVTVLITWKPKQHDPVEGSDKQEQFQVEH*

>peptide 3 (29 aa)
MAGISQTVIVFFTNSDSYDPFLMEKWLRMF

Sequence

>CNT30199626
AAACTTGTAACCATATAACATAATTAAACACTGTTTGCATAATGCATCTCTCATTATTTTAACCATTAAAGTAGTTTCTATATTGTGTAATTTATTATTC
AAGGATAACCCTATATGGATGAAACTGTTACTGTTTTAATCACTTGGAAACCCAAACAACATGATCCTGTGGAAGGAAGTGACAAACAGGAACAGTTCCA
GGTTGAACATTAAGCACTTGAAAAGCCAAATGGTTATGACTCCATTGTGTTGTCTCAGTGTGACAAACAGCAACAGCTTTAACTCTATTTCCATCAACAC
CTTCCAAAATCACAGAATAAACTTTTGTTTTATCTGTTTTATGACAGTAAAAAACTGCATATGGATAATTCACTTTATGGCACACAACACTTTTGTTCTT
CTCTCCCAATCTCTTCACTCCTTTAGCTATCACATATTCTTGTAACACACTACTTTCTTTTTTCACTTGTGTTGAAACAGCTTCAACGTTGTTTCCGAGT
TTCGAAGCAGCGAAATCAACCATAGATTCTAATGATGTTACACAAAGCTTTTCCTCGCCTTTGATGGCGGGCATTTCACAGACAGTAATAGTGTTTTTCA
CAAATTCAGACTCGTATGATCCGTTCTTGATGGAAAAGTGGTTAAGGATGTTTT