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Detailed information on CNT301996


BLAST search results

BLAST vs Swiss-Prot:
sp|P12365|CATA2_MAIZE, E-value = 4e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377107Zea maysArabidopsis thaliana36.9334.0481.37161forward
CNT3020926Zea maysCitrullus lanatus25.6916.0784.82112forward
CNT30380803Zea maysManihot esculenta39.4536.6781.4172forward
CNT30223857Zea maysHordeum vulgare24.3142.0691.51106forward
CNT30567580Zea maysActinidia chinensis32.3428.284.4141forward
CNT30592095Zea maysMusa acuminata16.2824.0794.3771forward
CNT30260467Zea maysBrassica rapa21.7922.7884.2195forward
CNT30139766Zea maysLolium perenne22.2519.893.8197forward
CNT30687547Zea maysTriticum urartu15.629.9691.1868forward

Expression of CNT301996

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MGPRAPTVRELSLFHTGAPELVVQYGALKALDGRC

>peptide 2 (41 aa)
GSRRGCRRRRRGRRTCAGSPGGARRSRGCASCPGCASAGWA*

>peptide 3 (68 aa)
MPTSSKRKENMCRLSGWCEKKSRMRQLSWMCVRGLGLSACTMSGNLMPSRMKKTGKLLPTRSQLPSRV*

>peptide 4 (98 aa)
VVGGDADVVEEEGEHVQALRVVREEVEDAPVVLDVRPRVGLERVHHVRELDAVADEEDGEVVAHQVPVALPGVELDGEPARVAQRLGAPALVGDVVVG*

Sequence

>CNT301996
CGGTAGTCGGCGGGGATGCCGACGTCGTCGAAGAGGAAGGAGAACATGTGCAGGCTCTCCGGGTGGTGCGAGAAGAAGTCGAGGATGCGCCAGTTGTCCT
GGATGTGCGTCCGCGGGTTGGGCTTGAGCGCGTGCACCATGTCCGGGAACTTGATGCCGTCGCGGATGAAGAAGACGGGGAAGTTGTTGCCCACCAGGTC
CCAGTTGCCCTCCCGGGTGTAGAACTTGACGGCGAACCCGCGCGGGTCGCGCAGCGTCTCGGGGCTCCCGCGCTCGTGGGTGATGTCGTGGTTGGCTAGC
TTCTCCACCAGGTGGTAGTCCTCCAGCAGGATGGGACCTCGTGCGCCGACGGTGAGGGAGCTGTCGTTGTTCCACACGGGGGCGCCGGAGTTGGTGGTCC
AGTACGGGGCGTTGAAGGCGCTCGACGGGCGGTGCT