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Detailed information on CNT30199079


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBRAT006199, E-value = 1e-165

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30505842Pisum sativumNicotiana attenuata7.3422.4593.5177forward
CNT3093954Pisum sativumSolanum tuberosum62.7340.287.99658forward
CNT30177809Pisum sativumSecale cereale37.5651.9189.59394forward
CNT3077259Pisum sativumBrassica juncea62.8273.9691.05659forward
CNT30265789Pisum sativumBrassica rapa36.9947.989.69388forward
CNT30609661Pisum sativumGossypium raimondii36.8922.5191.47387forward
CNT30229782Pisum sativumAnanas comosus21.3599.5692.86224forward
CNT30717682Pisum sativumMalus domestica golden13.6360.8593.01143reverse complement
CNT30360476Pisum sativumLactuca sativa54.4363.892.82571forward
CNT3054389Pisum sativumAmborella trichopoda50.1421.6190.3526forward
CNT30149435Pisum sativumBrachypodium distachyon7.3426.0189.6177forward

Expression of CNT30199079

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MLMTSPSMPCGNDSSGITPFTTMMLSRNQTIS*

>peptide 2 (31 aa)
YLIPFINLFYSFFPMSSSLNKNTSFFTVHIL*

>peptide 3 (36 aa)
MRQMCAFRLGSYSMVMILPYMSFSLRLKSILRYRCL*

Sequence

>CNT30199079
CATATTTGATTCCATTCATAAATCTATTTTATTCTTTCTTCCCTATGAGTTCTAGTCTCAATAAGAATACTAGCTTTTTTACTGTTCATATATTATAATA
TAAGTTGAATATACCGCACCAATTTGTTTAGGGTCAATAATTGTATATTGGGAACTACTGAACTCAATCACTTGCTGCCGTTATTCTTCAGTTTTCTGTT
GAAGTCTATCTACTCCAATTGGATCAGTGATCGATTTCTAGGTTTCGCCATAAACCCAATTGGTTACTTCCAATTACGTAAATCAATAGTTCAAACCGCA
CTCAAAGGTAGGGCATTTCCCATTTTTATAGGAACTTCTGTACCATAAACAATGGTATCTCCAATTATAGCCCCTTTGGGGTGTAAAATTTATCTTTTCT
CACCATCCCCATAGTGTATGAGACAAATGTGTGCATTTCGATTAGGGTCATATTCTATGGTTATGATTCTACCATATATGTCTTTTTCATTGCGTCTAAA
ATCAATTTTACGGTATAGATGCTTATGACCTCCCCCTCTATGCCCTGCGGTAATGATTCCTCTGGCATTACGCCCTTTACCACAATGATGCTGTCCAGAA
ATCAAACGATTTCGTGAATTGGATTTCACTTGACTGTTTACGGCTCCATTACGTGTGCTCGGGCTAGAAGTTTTGGATAAATGTATCGCCATGTTATGTT
ATTAAGTGTATTTTTATTAAAGTTCTTTTCTTTCTAAGAGGTGGAATAGAATAACACGGTTGAAGCGTAATGATCATACGTTGTTGATGAATTTAATCTT
CATCCCAGAATAATACTACAAGATATGTTTGCCCTACTTCCTTATTCACCCTAATATTAATGTCTTTGTCAAGTTTTTCCGAGAATTCAGATATCCATTT
TTGATTCAATTCAGAAATATCCAAAAGTAATATTATCATATATCTCCGGATTCTTGATTAGTTCTAATTTCTATAGAATAACACGGCTGAAGCGTAATGA
TCATACGTTTGTAATGCATTGTATGTCCTATAATAGGTCGCATTCTTCT