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Detailed information on CNT3019859


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01390|SUS_VIGRR, E-value = 7e-45

BLAST vs NONCODE:
NONTCAT003036, E-value = 7e-19

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500405Citrullus lanatusCoffea canephora15.1123.1984.35115forward
CNT30713351Citrullus lanatusMalus domestica golden34.359.0580.46261forward
CNT30626879Citrullus lanatusDaucus carota14.8520.2984.07113forward

Expression of CNT3019859

Peptides detected in this lncRNA

>peptide 1 (32 aa)
LLCIIHICRKHQHISLFINSCGNQRTTIFLHY*

>peptide 2 (72 aa)
FFALFTFAGSINISLFLLTPVEIREQLFFSITDAPLFHFPSKLSHSSTACGTESACNISILININLQLLHFS*

Sequence

>CNT3019859
CTTCTTTGCATTATTCACATTTGCAGGAAGCATCAACATATCTCTCTTTTTATTAACTCCTGTGGAAATCAGAGAACAACTATTTTTCTCCATTACTGAT
GCTCCCCTCTTTCATTTCCCTTCCAAGCTTTCTCACTCATCCACAGCCTGTGGCACAGAATCAGCCTGCAACATTTCCATTTTAATCAATATAAACCTCC
AACTACTCCATTTTAGCTAAAGATTTTGTTGCATGTATCTACTTACCAGCTTGCGGTACTTGAGGGCGTAAAACATTTCCAAATAACGGCGGCTCTCGAG
GCGGTCAAGGTTGGATACATGCTTCCAGAATCCGTAAACTCCAGTTAGTCATGGCCTCCACAACTGTCAAACCGAAAGCTTCGTACACAGCAGGCTGCAC
AAAAGCTCCCTTCGTGTCTGCAATGCATCGGTAGAGTTCACCGTTTCTTACTCGGTTCATCTGTGCAGAAATCCATCTAAATTGGCCATTCAGGTTGTAG
GTCTTTATTAGGCTATACATCTTTTCCATCTCAGCCTTCTCTTCATTGTCCTTAGACTCCTTCCTCCGGTCTCCAGCCACAACCACTAGGTTAACCAACT
CCCTAAGAGTCTTACCTGCCAGCAATCTCTTGGAAAGTACTTGTGATGATGAAATCGGTATGGTTCATGGCAATAAGATCAGCTGTGAATTGGGATGAGA
AGTGATACTTGTCATCAAATCTCTTCCAATAAATATCTGAATCAGGATATTTAGTTTTCTC