Detailed information on CNT3019810


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 8e-151

BLAST vs NONCODE:
NONTPRT002153, E-value = 3e-90

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3033564Citrullus lanatusTheobroma cacao51.1967.7283.09686forward
CNT30120605Citrullus lanatusCitrus clementina51.0468.4783.92684forward

Expression of CNT3019810

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MAANKATHTCQVFPFPEEKFRNHHGDEGQDGE*

>peptide 2 (30 aa)
MPSFPISRRKVQKPPRRRRTRWRVDSFWML*

>peptide 3 (48 aa)
MESRLLLDVVICKSSAIFQLFPSKDESLLVWGNTFLVLNLGLHVVNCV*

>peptide 4 (41 aa)
MVSEDSTSRVMVLPVRVLTKICIYTERNRDIRFSIPSQQTG*

>peptide 5 (79 aa)
MKSGFLLNVVIGKGSPIFQLLSGKYQSLLVWGDTFLILDLGLHVINSVGRLHLKGDGLSGKGLDEDLHATTEPEHEVKS*

Sequence

>CNT3019810
TGTTACTGTAACTATTTAATTACCATTCTCAGAGAAGTACTTCCAATTTATTTATCTGAACCCACTAGTATTATACATATCATATAGAATACTGTTCTCC
CTAAATTGCGAACTTGAGAGAACATTTAGAAACAACATACTTGAAAAGCAAAAGAAACAGAAGTATCCCAAACTCATTCCCATGGCCGCAAACAAGGCCA
CCCACACATGCCAAGTTTTCCCATTTCCAGAAGAAAAGTTCAGAAACCACCACGGAGACGAAGGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAA
TCTGCAAGAGTTCGGCCATCTTCCAATTGTTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTCACGT
TGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAAATTTGCATGCCACCGCGGAGACGGAGGACAAGATG
AAGAGTGGATTCCTTCTGAATGTTGTAATCGGCAAGGGTTCGCCCATCTTCCAACTGCTTTCCGGCAAATATCAATCTCTGCTGGTCTGGGGGGATACCT
TCCTTATCCTGGATCTTGGCCTTCACGTTATCAATAGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCA
TGCCACCACGGAGCCGGAGCACGAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGAT
CAAACGTTGCTGATCCGGGGGGATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTG
CCTGTGAGGGTTTTAACGAAGATTTGCATCTATACAGAACGAAACAGAGATATCAGATTCTCAATTCCATCTCAACAAACTGGGTAAACAGATCAGAATT
ACATAGTTTAAACCTAAATTCTATTTCTTTAAATCAGAATCGTACTGTTGAAAACCTAATTGAAGATTTCATACCATCAGAAAAATCCCAATTTTCCAGG
CAACCACGTAAAAACTTAGCAAAACCCAGAGATATGACAACAATCATAAACTTTAATTCGATCAAAGAGCAGATCTAGCCACAAAATCTCAAGTACCCTA
CAAGGATGCTCAGTTCTATAATTCACACAACTGAGAGCATCTCAAACGGAATTCTCTATTCAAAATCCTAAACATTTCATCTCTCAAGGCCAAACAACAT
GATCAAACAAGAAATGAAAGCAGAAAAATAAAATACCTTG