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Detailed information on CNT30197932


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9BBT5|RR4_LOTJA, E-value = 2e-111

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618959Pisum sativumSesamum indicum22.298.0787.99508forward
CNT30237795Pisum sativumBrassica oleracea22.1613.1686.53505forward
CNT30606803Pisum sativumGossypium raimondii6.2750.5392.31143forward
CNT30626868Pisum sativumDaucus carota19.7987.7486.92451forward
CNT30362312Pisum sativumSorghum bicolor4.0429.4994.5792reverse complement
CNT30596981Pisum sativumOryza meridionalis5.2238.2683.19119forward
CNT30116859Pisum sativumOryza nivara12.4668.1185.92284forward

Expression of CNT30197932

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MDFLIKFLYSTVGLEVDFFFFFSKKKTNFFHFF*

>peptide 2 (31 aa)
MEESNGLAIVCGGLIQENFESEFSIFCHPWP*

>peptide 3 (36 aa)
MLSKRISSNWSKTSPVDPFAFPAIRTYLSNCRSVRP*

>peptide 4 (29 aa)
MGKNTRIKILVILTRFKSDENNILQPAIH*

>peptide 5 (43 aa)
MTIALQMRCTRWMFVVPTILVSPDPDKKKGRIFLQSFLLLLIP*

Sequence

>CNT30197932
GTTAGTCCTGGTAAAGCCCCCAGACGCCGTATTTTTTTGAAACGAGGCCCCCTGTAACGTGACATAAACCCTCCTTTTTTAAATGGAAAATTTCATAAAG
AAAAATTAAAACTAAACTAAATGACAAATATTATAAATGAAGTGAAATCTACTTAAAGTATTGTACTATTAAAGTATTGTATTAGAAATAGTGTAGTATA
AAGAACAATTGGAAAGATTCTATCAGTATCCGAATTGAATTCTATTATATTTCTATATAAATAAAAAAAGGCGGTTATTTTATTGCTTTGTTCTACAGAA
AAGGAACTCCCTATTATTTTCCTAAAAAAAAAAGAGATTATCCCTGATTATCCCTTATGTGAAAAAAAAAAAAAATAGAGAAAAAAGCCGGCTATCGGAA
TCGAACCGATGACCATCGCATTACAAATGCGATGCACGAGATGGATGTTTGTTGTCCCAACCATTCTAGTTAGTCCCGATCCCGATAAGAAGAAAGGAAG
GATTTTTTTACAAAGTTTTCTCCTGTTGTTGATTCCCTAGCGTAGTGCTTCTTCCCCCATGCCGCCTATTGGTACTAGTGGAGTAGGATTCACCTAACCC
CATAGGTATATATAGGTATAACCTTTCGCTTAATACTACCTAAAATTGAAGCATATTGAGGCTGCATTAATCGGGAATACACGACAGAAGGGGTTAATCG
TTTTTTTTATTTCCAAACTTCACCTTCAGCAAGCGTAGGTTTTTTTTTTCCATTTTTTTTTTATTTGTCTCTGAAGTCGGTAAAAAAAAATAATCAAATC
GCACCATCTCTGTAATAAGTGTATGCCTCTTTTTCTCCAGAAGTTGTCGGAATTATTCGTAATAAGATATTGGCTACAATGGTAAAGGTCTTATCAATAA
AATTTCCATTTATCCTAGATCTAGTCATAGGTATCCATTCTATAATTTCATTTTTTATCGCGTGATAAAAAAATTCCCCAAACAAAGGAATTGTACAATA
CAGTACGAAATAACGTAAAAATGGACTTCTTAATCAAATTTCTTTATTCTACGGTAGGCCTTGAAGTAGATTTTTTTTTTTTTTTTTCAAAAAAAAAAAC
AAATTTTTTCCATTTTTTTTAGTTTCAATTGATTGTGTGCGCCTACGCAAATGGGATATAAATGGCTCAATAAATGGCTCACTATTCACTCGGTTTAGGG
ACATAATCATTATGTAGGAGAGATGGCCGAGTGGTTCAAGGCGTAGCATTGGAACTGCTATGTAGGCTTTTTGTTTACCGAGGGTTCGAATCCCTCTCTT
CCCGCACCCTTACCAAATTCATCAATGTTACTGACCTCAATGTTTGAAATAATAATAGATAACATTATTGCAACTTTGATATGCATTCTCTATTCCTAAT
TTGTTTCTGTAATTAATATAGAAAATTGTTGATCAAGTGGGTAAGGAATAACACTTTTCCTACACCCACTTCTATACACGAATGGGGAAAAATACTCGGA
TCAAAATTCTTGTTATTTTAACGAGGTTTAAGTCTGACGAGAATAATATTCTACAACCAGCAATTCATTAATTTCCAAACCAACCCATTTGCTATCTATT
ATTTGCTTGACTAATCCTTTATATTGGAATGGAAGAATCAAATGGGTTGGCAATTGTTTGCGGGGGGCTGATTCAAGAGAATTTTGAATCAGAGTTCTCG
ATTTTTTGTCATCCTTGGCCGTAATAATATCTTCAGGTTTACAACGATAACTTGGTATATCTACTATACGACCATTAACTAAAACATGTCTGTGGTTAAC
TAATTGACGGGCTTGAGGAATAGTCGCAGCCATACCCAATCGAAAAAGAATGTTATCCAAACGCATTTCCAGTAACTGGAGTAAAACTTCACCCGTTGAC
CCTTTCGCTTTTCCAGCGATACGAACGTATTTAAGCAATTGTCGTTCTGTAAGACCATAATGAAAACGCAATTTTTGTTCTTCTTCTAAACGAATACGAT
ATTGAGATTTTTTACTGGAGCGCGATTGTTCGCTTCCAACTGGAAGCTCTTTTCTGGTTAGTCCTGGTAAAGCCCCCAGACGCCGTATTTTTTTGAAACG
AGGCCCCAAGACCATAATGAAAACGCAATTTTTGTTTTTCTTCTAAACGAATACGATATTGAGATTTTTTACTGGAGCGCGATTGTTCGCTTCCAACTGG
AAGCTCTTTTCTGGTTAGTCCTGGTAAAGCCCCCAAACGCGGTATTTTTTTAAAACGAGGCCCCTTGTAACGTGACATA