CANTATAdb - search

Detailed information on CNT30197323

BLAST search results

BLAST vs Swiss-Prot:
sp|P12227|RPOC2_PEA, E-value = 9e-158

BLAST vs NONCODE:
NONATHT002194, E-value = 4e-60

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30711743	Pisum sativum	Glycine max	19.64	50.35	86.71	143	reverse complement
CNT3017987	Pisum sativum	Zea mays	89.56	37.26	82.67	652	forward
CNT30596895	Pisum sativum	Oryza meridionalis	79.67	51.19	82.07	580	forward

Expression of CNT30197323

Peptides detected in this lncRNA

>peptide 1 (60 aa)
SNNFFFRVILLCCLDRERCIILLNPVPTGIIPPKTTFSLRPFNHSIRPRRAAFAKTLAVS*

>peptide 2 (37 aa)
MFLLLPIIKLCNKLLLPRHAPFVLLAIIQLVRQVKIY*

>peptide 3 (57 aa)
MPIIFVIHSFQASILFSRFMDIESIERISNICSTFGRPCVISPDLDFSYMNVTKISP*

Sequence

>CNT30197323
TTCAAATAATTTTTTTTTCCGGGTAATCTTGTTATGTTGCCTTGACCGTGAACGGTGCATTATTCTTTTGAATCCGGTACCAACGGGTATCATTCCCCCT
AAAACAACATTCTCTTTAAGACCTTTCAACCATTCAATACGACCCCGAAGAGCGGCTTTTGCTAAAACTCTAGCAGTTTCTTGAAAACTCGCTTCGGATA
TGAAACTTTGAGTATTCAGAGATGTTTTTGTTACTCCCAATAATAAAGCTCTGTAACAAATTACTTCTTCCAAGGCACGCCCCGTTCGTTCTGCTCGCAA
TAATCCAATTAGTTCGCCAGGTAAAAATATATTAGACATTCCATCTTCTGAAACCAAGACTTTGGATGCTATTTGACGCACAATAATCTCGATATGTCTA
TTATGGATGTGTACTCCCTGGGATCGATAAACCTTTTGGATTTTATTAACCAAAGAAATACGACTTTGCGCGATAGTTAGCTCAGCACCAATCAAGAAAC
CCCAAGGAATGCCGATAATTTTTGTTATACACTCGTTCCAAGCATCAATTCTTTTTTCTAGATTCATGGATATTGAATCAATCGAACGTATTTCTAATAT
CTGTTCCACTTTTGGAAGACCTTGTGTCATATCACCGGATCTCGATTTTTCATATATGAATGTAACTAAAATATCTCCTTGAGAAAGGATCTCCCCATAA
TGGCCGTGAATGGTTGCTCCTGGAGTTG