Detailed information on CNT301973


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43695|TBB3_MAIZE, E-value = 2e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678154Zea maysSetaria viridis76.5729.9592.35183forward
CNT3092760Zea maysSolanum tuberosum64.8522.487.1155forward
CNT30586804Zea maysMusa acuminata74.0622.9388.7177forward
CNT30361407Zea maysSorghum bicolor36.8217.2210088forward
CNT30595966Zea maysOryza meridionalis36.8214.3696.5988forward
CNT30369370Zea maysOryza glumipatula77.8228.0593.55186forward

Expression of CNT301973

Peptides detected in this lncRNA

>peptide 1 (78 aa)
LVHALAGVPMQEGLAPEHGRELLAHAAEHLLDGGGVLVLHVDHLLVHLLGAHLAPEHGGRRQLRHRQRAVLLRPARRQR

>peptide 2 (78 aa)
SSMPSLVYQCRKALRLNMAVNCSLTRRNISWMEEEFLFCTLIICSSTSLVLILPRNMADAVSSGTVSARYCCDPRDVSG

Sequence

>CNT301973
CTCGTCCATGCCCTCGCTGGTGTACCAATGCAGGAAGGCCTTGCGCCTGAACATGGCCGTGAACTGCTCGCTCACGCGGCGGAACATCTCCTGGATGGAG
GAGGAGTTCTTGTTCTGCACGTTGATCATCTGCTCGTCCACCTCCTTGGTGCTCATCTTGCCCCGGAACATGGCGGACGCCGTCAGCTCCGGCACCGTCA
GCGCGCGGTACTGCTGCGACCCGCGCGACGTCAGCGGGG