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Detailed information on CNT3019729


BLAST search results

BLAST vs Swiss-Prot:
sp|P33080|AX10A_SOYBN, E-value = 3e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30542807Citrullus lanatusBrassica napus12.4437.9387.0177forward
CNT30234281Citrullus lanatusBrassica oleracea8.0822.129050forward
CNT30508399Citrullus lanatusSolanum lycopersicum10.8231.686.5767forward

Expression of CNT3019729

Peptides detected in this lncRNA

>peptide 1 (37 aa)
FSLNLLISILLLEKIRSKKMLKLGQKMKRKRGFQMDL*

>peptide 2 (44 aa)
MIESKFFFRKVQQILKQWMIQFAVIRWGKQEIYYTSKKLTSFSE*

Sequence

>CNT3019729
CTTTAGTTTGAATCTCTTGATTTCAATTCTCTTACTTGAAAAAATTCGAAGCAAGAAAATGTTAAAATTAGGGCAGAAGATGAAAAGAAAAAGGGGATTC
CAAATGGATTTATGAACAATTTAGAGCTGAAGTTAAGCTGATGAAGTAATCTTCGCTGCAAGGAATCGTGAGGCCACCCATTGGATGATCGAATCCAAAT
TCTTCTTCCGCAAGGTTCAGCAAATCCTTAAACAATGGATGATTCAGTTTGCAGTGATAAGGTGGGGGAAGCAAGAAATATATTATACATCAAAGAAATT
AACTAGTTTTAGTGAGTGAAGATGAAAGCTTTGGAAGGAAGCCACATGGCTTTGTCTTCTGAGTCATTATCTTCATATTGATTGGCATTCTGTACGATAA
TGCAGCAAATTGGTGACCTACCACTTTCTTCATATCAATGAATCCATTGGGATTGCCTTTTTGATGAAACATGCTTTTTAAGATTTTCTTTTCAGTGTGA
TAATGTATATTTGAATTTTATGATTCTCTTTTCATTATGATAATGTATATATGAGTTGTTGAGATGGAAAGGCTGTGAATCTTGAAATTTTCTTTACGAG
ATCAATAAACAAGGGAAGG