CANTATAdb - search

Detailed information on CNT30197034

BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 5e-48

BLAST vs NONCODE:
NONGMAT001001, E-value = 2e-53

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30317753	Pisum sativum	Corylus avellana	36.22	42.1	82.25	293	forward
CNT30504865	Pisum sativum	Nicotiana attenuata	26.95	42.58	81.65	218	forward
CNT3042757	Pisum sativum	Prunus dulcis	23.86	31.85	85.49	193	forward
CNT30261175	Pisum sativum	Brassica rapa	29.91	51.27	83.06	242	forward
CNT3050826	Pisum sativum	Cucumis sativus	20.15	47.8	84.66	163	forward

Expression of CNT30197034

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MIYQLTLNLHFNLNFKIRVKLDKHQFNSALQITN*

>peptide 2 (29 aa)
MLSRNTFLCLFAPPFPSPLPPLPRPDIFD*

Sequence

>CNT30197034
AAATAAATCAAAAACATGATATACCAGCTAACATTAAACCTTCATTTCAATTTAAACTTTAAAATTAGGGTAAAACTGGATAAACACCAGTTTAATTCAG
CCTTACAGATTACAAATTAAACCTAATCACCATCGTAAACCTAAGAAAATTCACATAATCAATAAGAAAAAGCATAAGATAGCTTCTTCTTCAACCTCCG
AAACCGTACAAGGTTCTTCCCTGCCTCTTGAGAGCGTAAACAACATCCATAGCTGTAACCGTCTTCCTCCTAGCGTGTTCGGTATATGTAACAGCATCAC
GAATCACATTCTCCAAAAAGATCTTCAAGACACCTCTGGTTTCTTCATAGATCAAACCGCTGATTCTCTTCACACCTCCTCTTCTCGCCAATCTACGAAT
AGCTGGCTTTGTGATACCTTGAATGTTCTTCCCTGCCTCTTGAGAGCATAAACAACATCCATAGCTGTAACCGTCTTCCTCCTAGCGTGTTCGGTATATG
TAACGGCATCACGAATCACATTCTCCAAAAAGATCTTCAAAACTCCTCTTGTTTCTTCATAGATCAAACCGCTGATTCTCTTCACACCTCCTCTTCTCGC
CAATCTACGAATAGCTGGCTTTGTGATACCTTGGATGTTGTCTCGCAACACCTTCCTGTGCCTCTTTGCACCTCCCTTTCCTAGTCCCTTACCACCCTTA
CCACGACCTGACATTTTCGATTGAAATTTTGTGATTGGGAATTTAGGATTTGAATATGAATTCGTGTTGAGAAATGTGAATGTGATCGCACTATTTATTC
ATCTGTTGC