Detailed information on CNT30196906


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000009, E-value = 8e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678637Pisum sativumSetaria viridis42.1478.5796.24319reverse complement
CNT30549212Pisum sativumIpomoea triloba43.861197.89332forward
CNT30569398Pisum sativumActinidia chinensis43.8616.9997.89332forward
CNT30552690Pisum sativumOryza glaberrima43.8621.6995.18332forward
CNT30657980Pisum sativumTriticum dicoccoides43.4680.6495.74329reverse complement
CNT30347837Pisum sativumEragrostis tef43.8643.0696.39332reverse complement
CNT30620564Pisum sativumCajanus cajan43.866.4298.19332reverse complement
CNT30354697Pisum sativumLactuca sativa29.1931.398.64221forward
CNT3036965Pisum sativumCucumis melo43.8645.698.19332forward
CNT30604015Pisum sativumOryza punctata43.8668.7490.36332reverse complement

Expression of CNT30196906

Peptides detected in this lncRNA

>peptide 1 (47 aa)
GDKLHRREGNNPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPSKSA*

>peptide 2 (64 aa)
MDNRLIFPKSSHRREGLAPRCRLFATWSCSRFQGLGCSPIKAVRELGSERRETFGPYPVWALEH*

>peptide 3 (68 aa)
MNGAKRFAEAVGCKNESVGERSALERSTRASRVGRSGSENVGLSNENIGENPMPRKPKDSSARFVHGG*

Sequence

>CNT30196906
TGGGGGATAAGCTTCATCGTCGAGAGGGAAACAACCCAGATCACCAGCTAAGGCCCCTAAATGATCGCTCAGTGATAAAGGAGGTAGGAGTGCAGAGACA
GCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTCAAAGAGTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGGGCTAAGCGATTTG
CCGAAGCTGTGGGATGTAAAAATGAATCGGTGGGGGAGCGTTCCGCCTTAGAAAGAAGTACCCGCGCGAGCAGGGTTGGACGAAGCGGAAGCGAGAATGT
CGGCTTGAGTAACGAAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGATTCCTCTGCAAGGTTCGTCCACGGAGGGTAAGTCAGGACCTAAGAT
CAGGCCGAAAGGCGTAGTCGATGGACAACAGGCTGATCTTCCCCAAGAGCTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTG
GAGCTGTAGTAGGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACATTCGGTCCATATCCGGTGTGG
GCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCTCTGGTGTGCCAGTTATCGTGCCAACGGTAAACGCTGGGTAGC
CAAGTGCGGAGCGGATAACTGCTGAAAGCATCTAAGTAGTAAGCCCACCCTAAGATG