Detailed information on CNT30196843


BLAST search results

BLAST vs Swiss-Prot:
sp|O22077|RBS_FAGCR, E-value = 3e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3069740Pisum sativumQuercus suber42.6522.4180.79203forward
CNT30402284Pisum sativumBeta vulgaris17.4437.989.1683forward
CNT30525342Pisum sativumPhaseolus vulgaris42.0219.6384200forward
CNT30629679Pisum sativumVigna unguiculata41.3936.0182.74197forward
CNT30712618Pisum sativumGlycine max40.7633.2284.02194forward
CNT30146625Pisum sativumMedicago truncatula47.0619.7989.29224forward
CNT30623489Pisum sativumDaucus carota42.0230.1781200forward
CNT30620550Pisum sativumCajanus cajan28.3611.2782.22135forward
CNT3026393Pisum sativumPopulus trichocarpa19.1223.0483.5291forward
CNT30176139Pisum sativumVigna angularis39.2913.9181.82187forward

Expression of CNT30196843

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MNMKPPTQIPSMEPIPSSEGIQLLSTIDLSSMVANRKESQTSSFQLEATPKYST

>peptide 2 (65 aa)
YSNLVGFWCVCNETDALNLTNVVETDDTDESLGVSGNNFIKLLQDLRSIMVPNIGSFHIVQYLPS*

Sequence

>CNT30196843
ATACTCAAACTTAGTAGGATTCTGGTGTGTGTGCAATGAAACTGATGCATTGAACTTGACGAACGTTGTCGAAACCGATGATACGGACGAAAGCTTGGGG
GTAAGCGGCAACAACTTCATCAAGCTCCTTCAAGACTTGAGAAGCATCATGGTACCAAACATAGGAAGCTTCCACATTGTCCAGTATCTTCCATCATAGT
ATCCTGGTGACTTGTTGTGCTCACGGTACACAAATCCTTTCTGCAACCAAACAGTCAAAATCAACTCATTACGGTTTCAAACAAAACTATTTATAGAATC
ATTGAAAAAAGGAATGAATATGAAACCTCCAACTCAAATTCCAAGCATGGAACCCATCCCTTCCTCAGAAGGTATTCAACTTCTTTCAACAATTGATCTC
TCGTCAATGGTGGCAAATAGGAAAGAGTCTCAAACTTCTTCTTTCCAATTGGAGGCCACACCTAAATATTCAACAA