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Detailed information on CNT30196370


BLAST search results

BLAST vs Swiss-Prot:
sp|P25862|TBB1_AVESA, E-value = 8e-130

BLAST vs NONCODE:
NONPOPT002096, E-value = 2e-99

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674634Pisum sativumSetaria viridis3444.6984.57324forward
CNT30522713Pisum sativumSetaria italica19.5250.1384.95186forward
CNT30641074Pisum sativumNymphaea colorata21.355.3187.19203forward
CNT30534291Pisum sativumEucalyptus grandis16.2624.3385.16155forward
CNT30377201Pisum sativumArabidopsis thaliana59.699.382.04568forward
CNT30728063Pisum sativumCorchorus capsularis41.0345.0585.68391forward
CNT30381383Pisum sativumManihot esculenta36.7319.9286.86350forward
CNT30402401Pisum sativumBeta vulgaris32.9526.4384.39314forward
CNT30629386Pisum sativumVigna unguiculata9.6535.6682.6192forward
CNT30486254Pisum sativumOlea europaea19.4148.384.86185forward
CNT30710178Pisum sativumGlycine max29.866.9883.45284forward
CNT3092760Pisum sativumSolanum tuberosum15.2220.9583.45145forward
CNT30291318Pisum sativumTriticum aestivum18.7853.7586.03179forward
CNT30223001Pisum sativumHordeum vulgare15.9554.6885.53152forward
CNT30390564Pisum sativumTriticum turgidum18.7858.8888.83179forward
CNT30562824Pisum sativumActinidia chinensis39.6667.9987.57378forward
CNT30542792Pisum sativumBrassica napus28.6562.980.59273forward
CNT30511260Pisum sativumSolanum lycopersicum18.7844.4287.71179forward
CNT30553024Pisum sativumOryza glaberrima20.6713.883.76197forward
CNT30442409Pisum sativumAegilops tauschii20.9929.8586.5200forward
CNT30252641Pisum sativumAvena sativa37.6744.1683.84359forward
CNT30261872Pisum sativumBrassica rapa43.9747.3484.01419forward
CNT30614070Pisum sativumArabis alpina58.6640.4580.14559forward
CNT305432Pisum sativumZea mays16.0541.6991.5153forward
CNT3041960Pisum sativumChlamydomonas reinhardtii11.2331.3885.98107forward
CNT30608822Pisum sativumGossypium raimondii33.2647.3183.6317forward
CNT30209019Pisum sativumHelianthus annuus45.8652.3484.9437forward
CNT30627268Pisum sativumDaucus carota44.634.3382.59425forward
CNT30681848Pisum sativumTriticum urartu37.9940.985.08362forward
CNT30722476Pisum sativumTriticum spelta20.9929.986200forward
CNT30341625Pisum sativumEragrostis tef47.7446.6782.86455forward
CNT30368415Pisum sativumSorghum bicolor38.6135.7682.88368forward
CNT30595566Pisum sativumOryza meridionalis15.9530.2287.5152forward
CNT30369403Pisum sativumOryza glumipatula24.7635.9286.02236forward
CNT30433292Pisum sativumPapaver somniferum45.4441.3282.68433forward
CNT30570854Pisum sativumVitis vinifera15.9575.6288.82152forward
CNT30706519Pisum sativumPrunus avium28.2332.4588.1269forward
CNT3033661Pisum sativumTheobroma cacao20.3693.2785.57194forward
CNT3057373Pisum sativumAmborella trichopoda20.3635.685.05194forward
CNT3024644Pisum sativumPopulus trichocarpa48.3722.5485.68461forward
CNT30322043Pisum sativumAsparagus officinalis48.0654.7280.79458forward
CNT30119164Pisum sativumCitrus clementina33.8969.3181.73323forward
CNT3036150Pisum sativumCucumis melo14.3840.6585.4137forward
CNT30330123Pisum sativumDioscorea rotundata36.9434.5882.95352forward
CNT30150001Pisum sativumBrachypodium distachyon8.0824.3785.7177forward
CNT3099786Pisum sativumOryza rufipogon18.4738.3486.36176forward
CNT30575061Pisum sativumOryza barthii24.7625.9686.02236forward
CNT30117026Pisum sativumOryza nivara15.9522.6287.5152forward
CNT30333708Pisum sativumCynara cardunculus19.7323.2182.45188forward
CNT30602704Pisum sativumGaldieria sulphuraria15.3223.3683.56146forward
CNT3049477Pisum sativumCucumis sativus10.2834.5189.898forward

Expression of CNT30196370

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MQPREWDEIHSQFPEIRVELTRETKTAGHTTHSS*

>peptide 2 (54 aa)
MYPNSHYRHLHFPNLEFPFSPHQAHNKNSSGYANYNAIFTKDRRVLLNTLTRHT*

>peptide 3 (40 aa)
MLLSASVNSISSMPSPVYQCKKAFLLNIAVNCSLTLLNIS*

>peptide 4 (38 aa)
MFLESHICWVRGAKPTIKKCSRGNGMRFTASFRRSELS*

>peptide 5 (34 aa)
MEVELPMKVEAMERPLGAMSQTLDLTLLGIHSTK*

>peptide 6 (59 aa)
MTKYKGNIIKHQIEETTMQAKIQKQTDGCRTTLNHVPKLPLPSPPFSQFGISILSTSGS*

>peptide 7 (75 aa)
MLWLFFLLVLIFSFFISSGILVLLVFRHKVIHVALCFCELHFIHAFTSVPMQESLPPKHSSKLFAHPSKHFLNGS*

Sequence

>CNT30196370
TTTTTGTTTTTTTTTGATCCAATGTGAAAAAGTCATGCATATAAATGACAAAATATAAAGGAAACATAATAAAGCATCAGATAGAAGAAACAACAATGCA
AGCCAAAATACAGAAACAAACAGATGGGTGCAGAACTACTCTAAACCATGTACCCAAACTCCCACTACCGTCACCTCCATTTTCCCAATTTGGAATTTCC
ATTCTCTCCACATCAGGCTCATAACAAGAATTCCTCCGGATATGCTAATTACAATGCAATCTTCACTAAAGATAGAAGAGTACTGCTGAACACACTTACA
CGTCATACTTAGTAACTTATTTTATTCATATCCATGCTCTGGCTCTTCTTCCTCCTCGTCCTCATATTCTCCTTCTTCATCAGCAGTGGCATCCTGGTAC
TGCTGGTATTCAGACACAAGGTCATTCATGTTGCTCTCTGCTTCTGTGAACTCCATTTCATCCATGCCTTCACCAGTGTACCAATGCAAGAAAGCCTTCC
TCCTAAACATAGCAGTAAATTGTTCGCTCACCCTTCTAAACATTTCCTGAATGGAAGTTGAATTACCAATGAAGGTAGAAGCCATGGAGAGACCTCTAGG
AGCAATGTCACAGACACTTGACTTAACATTGTTGGGGATCCACTCAACAAAGTAGGAAGAGTTCTTGTTCTGGACGTTAATCATTTGTTCATCCACCTCT
TTGGTGCTCATTTTACCCCTGAACATGGCAGATGCAGTGAGGTAGCGGCCGTGCCTGGGATCAGCAGCACACATCATGTTTTTGGAATCCCACATTTGCT
GGGTGAGAGGTGCAAAACCAACCATAAAGAAATGCAGCCGAGGGAATGGGATGAGATTCACAGCCAGTTTCCGGAGATCAGAGTTGAGTTGACCAGGGAA
ACGAAGACAGCAGGTCACACCACTCATAGTAGCTGAGATCAAGTGGTTCAAAT