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Detailed information on CNT3019629


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7YNT5|PSBN_SUAMA, E-value = 6e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30199419Citrullus lanatusPisum sativum21.657.9593.2689forward
CNT30507056Citrullus lanatusNicotiana attenuata63.9956.6887.07263forward
CNT3090241Citrullus lanatusSolanum tuberosum54.2616.9286.55223forward
CNT30390502Citrullus lanatusTriticum turgidum26.288.0992.59108forward
CNT30147444Citrullus lanatusMedicago truncatula51.8263.0286.38213reverse complement
CNT30717085Citrullus lanatusMalus domestica golden54.0128.7987.84222forward
CNT30357898Citrullus lanatusLactuca sativa77.1315.8889.59317forward
CNT3053422Citrullus lanatusAmborella trichopoda70.5611.8985.17290reverse complement

Expression of CNT3019629

Peptides detected in this lncRNA

>peptide 1 (32 aa)
SGLLVSFTRYALYTAFGQPSQQLRDPFEEHGD*

Sequence

>CNT3019629
TCTGGTTTACTTGTAAGTTTTACTAGGTATGCCTTATATACTGCTTTTGGGCAACCCTCTCAACAACTAAGAGATCCATTCGAAGAACACGGGGACTAGT
TGAAGTAATGAGCCTCACAATATTGTGAGGCTCATTACTTCAATTGAGATAATGAGAAATCATTTCGCCTTTTTAGTTGAAACTTTAGGTGGTTCGCGAA
AAAAGATAGCGAAAAAAAATTATTCCTAGAGTCGAGACTAAGAGGAATGTATAAACCAATGCTTCCATAGATTTGATTTCGGTTTACAATTATAGCTTCC
ATACCTGTTTAGTTGGGATCTTTTTACGGATAAAAAAAAGACCAAGACAAGAGTCAAAGAAATGAAAAGTCGGCAATCCGAATCAAGATTTATCCACTAC
CCCTATCTATG