Detailed information on CNT30196209


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8S8X7|PSBC_ATRBE, E-value = 3e-63

BLAST vs NONCODE:
NONORUT001181, E-value = 2e-64

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693553Pisum sativumOryza sativa67.4825.6688.92361forward
CNT30542882Pisum sativumBrassica napus67.482089.47361forward
CNT30441515Pisum sativumAegilops tauschii63.1852.5787.57338forward
CNT30425595Pisum sativumPapaver somniferum49.7245.4787.97266forward
CNT30109402Pisum sativumOryza longistaminata66.1726.8888.98354forward
CNT30148380Pisum sativumBrachypodium distachyon22.8988.52122forward
CNT30103699Pisum sativumOryza rufipogon42.898.7188.65229forward
CNT30557406Pisum sativumPanicum hallii17.9422.7590.6296forward

Expression of CNT30196209

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MEPNHTCPPIISSKLSTLTLFSVYSSPNH*

>peptide 2 (58 aa)
MPDSTKYTNGTQPYMSPNYIFQIVHTNSFFSLLKSKPLGPLRGSNQGARRSQKRIVSPP

>peptide 3 (39 aa)
PLRGSNQGARRSQKRIVSPPKMTSPVGERIRYLPKTVGP*

>peptide 4 (33 aa)
MQRVWLRYARFHQVYKWNPTIHVPQLYLPNCPH*

Sequence

>CNT30196209
CCTCTTAGAGGTTCTAACCAGGGAGCACGCAGATCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACTTCTCCGGTCGGAGAACGCATTAGATATTTAC
CTAAAACGGTAGGCCCTTGAGCAGAGCCTACATTAGCTCCAAGACATTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCCGGTCCAGT
GGGACCATAAAACTCACTAGGATAAGCAGCATTATTAAACCAGACAAAGCAACAAGCTATAAAACCAAAAACGGCTAAAGCACCTAAACTATAGATAAGT
AAGCTTCTCCAAACCATACTAGTGCACGCCGAGCCCATGCAAAGGGTTTGGTTAAGATATGCCAGATTCCACCAAGTATACAAATGGAACCCAACCATAC
ATGTCCCCCAATTATATCTTCCAAATTGTCCACACTAACTCTTTTTTCAGTCTACTCAAGTCCAAACCATTAGGACCTCTTAGAGGTTCTAACCAGGGAG
CACGCAGATCCCAAAAACGCATAGTTTCTCCTCCA