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Detailed information on CNT30196027


BLAST search results

BLAST vs Swiss-Prot:
sp|P51086|CHS4_TRISU, E-value = 4e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30610059Pisum sativumGossypium raimondii41.0554.7681.55374forward

Expression of CNT30196027

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MSCLASNEGAMYSQTLGFSFKISSVRYMYLLLIMDLSPEVVI

>peptide 2 (31 aa)
MAPSLSGAIVCAVQTISNIGFSISGIGSEPK*

>peptide 3 (29 aa)
MLVPLHEGVHLWLLHYQEQSFVQSKPSQI*

Sequence

>CNT30196027
AACATCTTTAAGAAGGTGAAATGTTAGTCCCGCTTCACGAAGGTGTCCATCTATGGCTCCTTCACTATCAGGAGCAATCGTTTGTGCAGTCCAAACCATC
TCAAATATAGGTTTTTCAATTTCTGGTATTGGATCAGAACCAAAATGAGTGCAGCAGCTCCGTCTCCAAATAGTGCTTGTCCAACAAGACTGTCCAAGTG
AGTATCGCTTGGGCCACGGAATGTGACTGCGGTGACTTCAGAACAAACAACCAACACACGAGCACCTTTGTTATTCTCAGCCAGTCCTTGGCCAAGCGAA
GCACCGTGCCACCTGCAAAGCAACCTTGTTGGTACATCATATACCTTTCACATATGGGCGAAGCCTAACAATTTGGTGAGTTGATAATCAGCTCCCGGCA
TGTCTACCCCAACTTGTAGTGCAAAAGATTAAGTGAGTAATCTTTGACTTTGGTTGGCCCCATTCTTTTATAGCTTTGACAGCAGCTTCTTTCCCTAGTC
TAGAACAAACAACCAACACACGAGCACCTTTGTTGTTCTCAGCCAAGTCCTTGGCCAAACGAAGCACCGTACCACCTGCAAAGCAACCTTGTTGGTACAT
CATATACCTTTTCACATATGGGCGAAGACCTAACAATTTGGTGAGTTGATAATCAGCTCCAGGCATGTCTACACCACTTGTAGTGCAGAAGATTAAGTGA
GTAATCTTTGACTTTGGTTGGCCCCATTCTTTTATAGCTTTGACAGCAGCTTCTTTCCCTAGTCTAGGTACCTCTACCACCACCATGTCTTGCCTTGCAT
CCAATGAAGGGGCCATGTATTCACAAACACTTGGATTTTCTTTCAAAATCTCTTCTGTTAGGTACATGTATCTCCTATTGATCATGGATTTATCGCCTGA
AGTAGTTATAA