Detailed information on CNT30196025


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01288|CHS6_PEA, E-value = 3e-146

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379505Pisum sativumManihot esculenta15.1629.7483.63171forward
CNT30171495Pisum sativumTrifolium pratense38.6553.1189.45436forward
CNT30355633Pisum sativumLactuca sativa13.2127.2985.91149forward

Expression of CNT30196025

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MLVQHRLSKVSVTRATECNRGDFRTNNQHTSAFVVLSQVLSQTKHRPTGKTPLLVHHVPLHIWTKT*

>peptide 2 (58 aa)
MNNTHALDMFPYSLSTSLVAFIFSGFKPNFSSTWSRIAGPNPNNTPQSSPSPVVLSPC*

>peptide 3 (29 aa)
MLVQLREDDHQWHLRCLEQLFVRSKPSQK*

>peptide 4 (39 aa)
MAPSLSGAIVCAVQTISKIGFSISGRGSTNNKCSSSISE*

>peptide 5 (39 aa)
MENNSFNGKSRSESEQHTPVKPLSGSLKSLLSRFLSHLV*

>peptide 6 (42 aa)
MNNTHALDMFPYSLSTSLVAFIFSGFKPNFSSTWSRIAGPPG*

Sequence

>CNT30196025
CAAATATGTTATTTAATAGTCAAAGGGATGTGAAAATATTTATTTTAAATCAATAACAAAGGCTAAAATAAAAGATATTAACGATATATGTATTTTAACA
TGGTTGATACATATTGAAAATTGTATTTATTATTAAAAGAAAATTCAAGCAAGATTAAAGTAATAGAATGAAATAAACCAAGCAAGCATCTCAAATAGCC
ACGCTATGGAGAACAACAGTTTCAATGGTAAGTCCAGGTCCGAATCCGAACAACACACCCCAGTCAAGCCCCTCTCCGGTAGTCTTAAGTCCTTGTTGAG
CCGATTTCTTTCTCATCTCGTCTAAGATGAACAATACACATGCACTTGACATGTTTCCGTATTCACTAAGTACTTCCCTTGTGGCTTTCATCTTTTCAGG
TTTTAAGCCTAACTTTTCCTCAACTTGGTCTAGAATTGCAGGTCCGAATCCGAACAACACACCCCAGTCAAGCCCCTCTCCGGTAGTCTTAAGTCCTTGT
TGAGCCGATTTCTTTCTCATCTCGTCTAAGATGAACAATACACATGCACTTGACATGTTTCCATATTCACTAAGTACTTCCCTTGTGGCTTTCATCTTTT
CAGGTTTTAAGCCTAACTTTTCCTCAACTTGGTCTAGAATTGCAGGTCCACCGGGATGAGCAATCCAAAAGATTGAGTTATAATCATCAATGTTCAATGG
TTGGAATGCTTCAACCAGTGCTTTATTAATGTTCTTCGAAACAATCCCGGGAACATCTTTAAGAAGATGAAATGTTAGTCCAGCTTCGCGAAGATGACCA
TCAATGGCACCTTCGCTGTCTGGAGCAATTGTTTGTGCGGTCCAAACCATCTCAAAAATAGGTTTTTCAATTTCAGGTAGAGGGTCAACCAACAATAAGT
GCAGCAGCTCCATCTCCGAATAATGCTTGTCCAACATAGACTGTCCAAGGTGAGTGTCACTAGGGCCACGGAATGTAACCGCGGTGACTTCAGAACAAAC
AACCAACACACGAGCGCCTTTGTTGTTCTCAGCCAAGTCCTTAGCCAAACGAAGCACCGTCCCACCGGCAAAACACCCTTGTTGGTACATCATGTACCTC
TTCACATATGGACGAAGACCTAACAGTT