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Detailed information on CNT3019597


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 9e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675350Citrullus lanatusSetaria viridis20.0572.1286150forward
CNT30532226Citrullus lanatusEucalyptus grandis24.7325.5985.41185forward
CNT30316236Citrullus lanatusCorylus avellana27.0144.0185.64202forward
CNT30547527Citrullus lanatusIpomoea triloba21.9337.8883.54164forward
CNT30512951Citrullus lanatusJuglans regia53.2151.0384.92398forward
CNT30371838Citrullus lanatusArabidopsis thaliana41.8423.7379.87313forward
CNT30405825Citrullus lanatusBeta vulgaris19.5263.7687.67146forward
CNT30711584Citrullus lanatusGlycine max32.3534.3883.88242forward
CNT3045373Citrullus lanatusPrunus dulcis53.6151.1584.04401forward
CNT30191206Citrullus lanatusSecale cereale37.5722.9683.63281forward
CNT30300473Citrullus lanatusTriticum aestivum41.1831.8282.14308forward
CNT30224354Citrullus lanatusHordeum vulgare24.3335.0783.52182forward
CNT30395070Citrullus lanatusTriticum turgidum21.9321.4481.71164forward
CNT30561658Citrullus lanatusActinidia chinensis54.0134.5382.43404forward
CNT3085191Citrullus lanatusVigna radiata33.1634.5985.08248forward
CNT30510505Citrullus lanatusSolanum lycopersicum50.2734.6281.91376forward
CNT30143941Citrullus lanatusMedicago truncatula31.5552.6883.05236forward
CNT30441158Citrullus lanatusAegilops tauschii41.1840.5882.47308forward
CNT30313706Citrullus lanatusCamelina sativa32.4974.5480.66243forward
CNT3059659Citrullus lanatusArabidopsis lyrata27.0146.5484.16202forward
CNT30612508Citrullus lanatusArabis alpina54.1415.9679.01405forward
CNT3015270Citrullus lanatusZea mays30.7550.7782.17230forward
CNT30605685Citrullus lanatusGossypium raimondii20.3219.984.87152forward
CNT30203835Citrullus lanatusHelianthus annuus26.0740.6283.59195forward
CNT30683923Citrullus lanatusTriticum urartu21.9317.9282.93164forward
CNT30345702Citrullus lanatusEragrostis tef54.015082.92404forward
CNT30361520Citrullus lanatusSorghum bicolor41.0444.8883.71307forward
CNT30596064Citrullus lanatusOryza meridionalis17.2525.284.5129forward
CNT30359537Citrullus lanatusLactuca sativa18.1820.6481.62136forward
CNT30153558Citrullus lanatusPrunus persica26.7459.1785.5200forward
CNT30332479Citrullus lanatusDioscorea rotundata19.9252.6583.89149forward
CNT30100260Citrullus lanatusOryza rufipogon38.139.6983.16285forward
CNT30575986Citrullus lanatusOryza barthii25.5316.1782.72191forward
CNT3050899Citrullus lanatusCucumis sativus23.1368.6589.6173forward

Expression of CNT3019597

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MDPTTSCPNGRKHTVGTPARKLQLSMCSRTRKTQ*

>peptide 2 (37 aa)
MSQWSKTHCGNACPEVAALNVLENPKDSMTGRYALML*

>peptide 3 (70 aa)
MVENTLWERLPGSCSSQCAREPERLNDREIRLDVVKRGTGPLHFLKDVPTLLVKNTVDTTKSLLRSLNLH*

>peptide 4 (73 aa)
CDLKFSVTKRQNCSTSWEATTFIFMKNISGMKQKKTISKPGKQTNTSGLHCEVLGCAKTTISTHIQKGKLKVK*

>peptide 5 (30 aa)
MGGYHIHFYEKYIWHETKKNHIQTREANQY*

Sequence

>CNT3019597
TGTGACTTGAAATTTTCAGTTACGAAGAGACAAAATTGTTCCACTTCATGGGAGGCTACCACATTCATTTTTATGAAAAATATATCTGGCATGAAACAAA
AAAAAACCATATCCAAACCAGGGAAGCAAACCAATACTAGTGGTCTCCATTGTGAAGTTTTAGGCTGTGCGAAAACAACGATCTCCACTCACATTCAAAA
AGGAAAATTAAAAGTAAAATAAGTGTCTTCTAGATAAATATGCAAAAAGAACATTCGATAAGCCAAGCCAGACAACTCAATTAGAACCTCCTCTGCAAAT
TTTGTAATTGCTTCTCAATAAATAACCTCGCAAGTGATCTACAGCTTGTCCTCGAACTCGGAAAGTGGGTCATTTGTTCCTTCAATCCCTTCCTCTTGCG
GATATCTGCAACTAACTGTGCAGCCTGGGAACCAGGTTCCAATGGATCCGACGACATCATGTCCCAATGGTCGAAAACACACTGTGGGAACGCCTGCCCG
GAAGTTGCAGCTCTCAATGTGCTCGAGAACCCGAAAGACTCAATGACAGGGAGATACGCCTTGATGTTGTAAAGAGGGGTACCGGGCCTCTGCATTTCCT
CAAAGACGTGCCCACGCTTCTGGTTAAGAACACTGTAGATACCACCAAGAGCTTGCTCAGGAGCCTGAATCTCCACTAGGTACACAGGCTCAAGAAGTCT
TGGTTTGGCGGTCAGCTGAGAAGCGTAAATTACCCTCCTAGCGGTCGG