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Detailed information on CNT3019595


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 1e-106

BLAST vs NONCODE:
NONSLYT002586, E-value = 2e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674978Citrullus lanatusSetaria viridis38.7428.985.58215forward
CNT30640184Citrullus lanatusNymphaea colorata52.7938.7183.28293forward
CNT30547471Citrullus lanatusIpomoea triloba37.338.2680.68207forward
CNT30512774Citrullus lanatusJuglans regia87.0338.783.02483forward
CNT30373037Citrullus lanatusArabidopsis thaliana70.2719.1581.28390forward
CNT30728649Citrullus lanatusCorchorus capsularis50.9925.9987.63283forward
CNT30405829Citrullus lanatusBeta vulgaris70.8147.5882.7393forward
CNT30636551Citrullus lanatusCapsicum annuum36.9431.0682.93205forward
CNT30224330Citrullus lanatusHordeum vulgare27.5731.6883.66153forward
CNT30543621Citrullus lanatusBrassica napus13.1528.5284.9373forward
CNT30510528Citrullus lanatusSolanum lycopersicum90.0938.8282.6500forward
CNT30143750Citrullus lanatusMedicago truncatula28.4720.6381.65158forward
CNT30665536Citrullus lanatusTriticum dicoccoides62.1652.3582.03345forward
CNT30263812Citrullus lanatusBrassica rapa68.2955.7481.27379forward
CNT30612239Citrullus lanatusArabis alpina85.4118.0579.96474forward
CNT30448454Citrullus lanatusSaccharum spontaneum86.4926.0382.5480forward
CNT3015244Citrullus lanatusZea mays4079.8685.14222forward
CNT30716450Citrullus lanatusMalus domestica golden77.6674.4483.53431forward
CNT30479087Citrullus lanatusArabidopsis halleri33.3363.5784.32185forward
CNT30361949Citrullus lanatusSorghum bicolor69.9145.9782.99388forward
CNT30705326Citrullus lanatusPrunus avium94.2340.782.03523forward
CNT3054398Citrullus lanatusAmborella trichopoda25.2320.4182.14140forward
CNT3024028Citrullus lanatusPopulus trichocarpa66.4949.9382.93369forward
CNT30119815Citrullus lanatusCitrus clementina33.6940.7485.03187forward
CNT30557952Citrullus lanatusPanicum hallii61.6241.9680.41342forward

Expression of CNT3019595

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MKDHHFQKSIACWEPCLHDPLHQCFTHQILLFRLHHNSKLLQHGP*

>peptide 2 (41 aa)
MTLFINALLIRSFSSDFITTPSFCNMGHSLSFRITTSNGTRI

>peptide 3 (60 aa)
ILCDELIQSNHGNSVTTRHILHRFLLLSHPNDSSLDTLHIQIFLLAGNIVWSHNSNFQTS*

>peptide 4 (38 aa)
MATVLPHGTSSTVSCFFPIQMTVLWTLFTYKSFFSPGT*

>peptide 5 (36 aa)
MLYSSDPSLQTSSQLQASATWAIACPSGSQLLMALA*

Sequence

>CNT3019595
ATTCTTTGTGATGAATTGATCCAATCCAACCATGGCAACAGTGTTACCACACGGCACATCCTCCACCGTTTCTTGCTTCTTTCCCATCCAAATGACAGTT
CTCTGGACACTCTTCACATACAAATCTTTCTTCTCGCCGGGAACATAGTTTGGTCCCATAATTCTAACTTTCAAACCAGTTGAAACTTTCCCAGAGAAGA
CACGTCCAAAGGCAAAGAACCTGCCCTTGTCTGATGCAGGAATCATCTTCGATACATAAAGCATAAGAGGTCCTTCAGGATCACAACTTCTAATGGCACT
CGCATAAGCATCATCTAGTGGACCCTCGTACAAATTCTCAACACGGTACTTTTGAGCCGTGGCAGGGGATGGAAGATGAAAGATCATCATTTCCAAAAGA
GCATTGCTTGCTGGGAGCCATGTTTGCATGACCCTCTTCATCAATGCTTTACTCATCAGATCCTTCTCTTCAGACTTCATCACAACTCCAAGCTTCTGCA
ACATGGGCCATAGCTTGTCCTTCAGGATCACAACTTCTAATGGCACTCGCATAAG