« Back to Secale cereale search


Detailed information on CNT30194485


BLAST search results

BLAST vs Swiss-Prot:
sp|P11383|RBL_WHEAT, E-value = 0.0

BLAST vs NONCODE:
NONMEST005601, E-value = 4e-147

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678279Secale cerealeSetaria viridis38.1740.7996350forward
CNT30225281Secale cerealeHordeum vulgare35.2296.4298.14323forward
CNT30257373Secale cerealeAvena sativa72.4110098.04664forward
CNT30627897Secale cerealeDaucus carota22.4613.6988.83206forward

Expression of CNT30194485

Peptides detected in this lncRNA

>peptide 1 (72 aa)
SSGLHLQAARIISLPSRARSRPSLRACTQASKATRLAAAPGAFPQGCPKVPPPNCNTESSPKISVRAGICQT*

>peptide 2 (30 aa)
FRTPFASCSDNFITFASKIAPFVTSLYTGF*

Sequence

>CNT30194485
AGTTCAGGACTCCATTTGCAAGCTGCTCGGATAATTTCATTACCTTCGCGAGCAAGATCGCGCCCTTCGTTACGAGCTTGTACACAGGCTTCTAAAGCCA
CTCGATTAGCTGCTGCACCAGGTGCATTTCCCCAAGGATGTCCTAAAGTTCCTCCACCAAATTGTAATACAGAATCGTCCCCAAAGATTTCGGTCAGAGC
TGGCATATGCCAAACATGAATACCACCTGAAGCTACCGGTATAACACCTGGCATGGATACCCAGTCCTGAGTGAAAAAGATACCGCGAGCACGATCTTTT
TCAATAAAATCATCGCGCAATAAATCAACAAAACCTAAAGTCATTTCGCGTTCCCCTTCTAACTTACCTACTACTGTACCGGAGTGGATATGATCTCCCC
CAGACATACGCAATGCTTTAGCTAATACACGGAAATGCATAACATGATTTTTCTGTCTATCAATAACTGCATGCATTGCACGGTGAATGTGAAGAAGTAG
GCCATTGTCGCGGCAATAATGAGCCAAAGTAGTATTTGCGGTGAATCCCCCAGTTAAGTAGTCATGCATTACAATAGGAACCCCTAATTCTCTTGCAAAT
ACAGCTCTCTTAATCATTTCTTCACATGTACCCGCAGTCGCATTCAAGTAATGCCCCTTGATTTCACCGGTTTCGGCCTGTGATTTATAAATAGCTTCGG
CACAAAAGACAAAACGGTCTCTCCAGCGCATAAATGGTTGTGAGTTTACGTTTTCATCATCTTTGGTAAAATCAAGTCCACCACGTAGACACTCATAACA
CGCTCTACCATAATTTTTTGCGGATAATCCCAATTTTGGTTTAATAGTACATCCCAATAAAGGACGACCATACTTGTTCAACTTATCTCTTTCAACTTGG
ATACCATGAGGCGGGCC