« Back to Secale cereale search


Detailed information on CNT30194417


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30388096Secale cerealeTriticum turgidum3.7324.6692.5954reverse complement
CNT3015736Secale cerealeZea mays4.6924.7394.1268reverse complement

Expression of CNT30194417

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MNHRAPLPRLGRAEGADSRGQVPYRWSLSIRNLPILD*

>peptide 2 (39 aa)
MRQAWVGLYMHIRNGVGKSRKSLSVHVGYESSLNYIESN*

>peptide 3 (32 aa)
KVVLIQLVCVKHIASVPSETGSNSDFEYETLI*

>peptide 4 (28 aa)
MLVNWQIHSKQWLVGGLTTTAIYHYSAPK

>peptide 5 (34 aa)
MNIAAEFKRKRKKLPNISAQRAYKDTIKLLRSAK*

Sequence

>CNT30194417
GAAAAGTAGTTTTGATTCAGCTTGTATGTGTTAAGCATATAGCTAGTGTTCCTTCTGAGACAGGATCAAACTCAGATTTTGAATATGAGACACTGATATA
ACCTAGTGAGCTGGGTCTACAACTAAACATTGAATCTCTGTCCAACTGGTAGATTCGGCTGGTAGATTCTTTAGCCTACATTGTAGTGATATCAGAACAC
TTTTAACCAAATCTAGAATCATGACCTAGAGATAATAAAAAAATCTGGAATTTTTAAAAGTTAAGGCTTCAACAGACAACTCAAAAGCTGAGGGAATGAA
ACAGAGCTTCCAGCCAAAAGCATTATGCACCAACAAGAAGTAACTATGGCAGTTTAACCTCAACATGGACTAATGCATTTTGGACTGTTATAGACAAGCA
ACACCAACAACTGTATGGGCTTCAAGTCCAATATGCAGCAGCCATGCGGCAAGCCTGGGTAGGTTTGTACATGCATATTAGGAATGGTGTAGGAAAAAGT
AGAAAGAGTTTAAGTGTCCATGTTGGATATGAATCGTCCTTAAATTACATAGAATCCAATTAAGGGAGGAAGATAGAGTTGTAACTCGGTCAGGAGTTTT
TGTTGTGATCCAACTTATGGATCAAGTTAGCTGTTGTACATAAAGAACTAGCGTGTACTTGTTTTAGACAACAGGTCAACAAACAAAAGTTCCAATGAAC
CACAGAGCCCCTCTACCACGGCTGGGGCGAGCCGAGGGGGCGGACAGTAGAGGGCAAGTGCCCTATCGCTGGTCATTATCAATACGAAATTTACCCATTC
TGGACTAGGTCGATAACCAACAACAGCAGGTTTTAAGGTGGTCTTCAATGGGGCGGAGTGAAACAACACCACTGGTGATGCACGTCTGGAAGAGTTCCGA
TAGAAAATTGTCCTAGCACACGTAATGGTAAGCATGGAAAATCACATGGTTCAATTCATCCGTAATGTAGAGAGAAAATAGAGATGAGCATGGCAGACAG
GTTTGACAATGAAGGTTGTGTATAGCACACAACACATGTACCACAAACAGAGCCCCCCCCCCCCCCCCAGGGGGGAGAGGTAAGCAGCATTATCATAATG
AAACACGTTAGATAACAGAATCAAACATGCCAAGAATGCACTGGCCAATTCAAAGTTCATGAACATAGCAGCTGAATTCAAAAGGAAAAGAAAAAAACTG
CCTAACATATCAGCACAAAGGGCCTACAAAGACACCATTAAATTGCTAAGGTCCGCCAAGTGAAAAACAGTCAGGTAGGAGATATCAATTACTCCCTCCC
ATAGAGAAGAGCTCTGAAGTTAATCGATTCTCAGATACAAGGACAATTTACCTCTTTCGCATATGTTAGTGAATTGGCAGATACACAGCAAACAATGGCT
TGTCGGGGGCTTAACCACAACGGCCATTTACCATTATAGTGCTCCAAAA