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Detailed information on CNT30194121


BLAST search results

BLAST vs Swiss-Prot:
sp|A1E9J2|YCF3_HORVU, E-value = 5e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Secale cerealeOryza sativa10016.0994.53895forward
CNT30529029Secale cerealeEucalyptus grandis36.9816.1688.82331forward
CNT30618958Secale cerealeSesamum indicum51.288.2488.24459forward
CNT3020650Secale cerealeCitrullus lanatus49.2725.3491.38441forward
CNT30730408Secale cerealeCorchorus capsularis48.0490.9190.7430forward
CNT30632355Secale cerealeVigna unguiculata35.7536.8789.69320forward
CNT30201085Secale cerealePisum sativum49.2721.8390.7441forward
CNT3047566Secale cerealePrunus dulcis36.9817.1691.54331forward
CNT3094383Secale cerealeSolanum tuberosum13.1854.8889.83118reverse complement
CNT30390237Secale cerealeTriticum turgidum72.2929.9498.15647forward
CNT30237795Secale cerealeBrassica oleracea35.538.2988.99318forward
CNT30510815Secale cerealeSolanum lycopersicum26.8250.3187.92240forward
CNT30556045Secale cerealeOryza glaberrima10027.4294.53895forward
CNT30598583Secale cerealeFraxinus excelsior28.0425.286.06251forward
CNT30445979Secale cerealeSaccharum spontaneum43.9110097.71393forward
CNT3017916Secale cerealeZea mays89.538.8595.63801forward
CNT30232528Secale cerealeAnanas comosus85.4738.6690.33765forward
CNT30217417Secale cerealeKalanchoe fedtschenkoi42.5781.4187.66381forward
CNT30655373Secale cerealeRosa chinensis52.7411.2790.89472forward
CNT30627898Secale cerealeDaucus carota49.1614.2991.36440forward
CNT30595954Secale cerealeOryza meridionalis60.3441.1393.7540forward
CNT30360010Secale cerealeLactuca sativa23.6919.7489.15212forward
CNT3057361Secale cerealeAmborella trichopoda35.646.3490.6319forward
CNT3022800Secale cerealePopulus trichocarpa36.6596.4790.85328forward
CNT30332506Secale cerealeDioscorea rotundata52.7451.8188.14472forward
CNT30149145Secale cerealeBrachypodium distachyon90.545.194.69810forward
CNT30103542Secale cerealeOryza rufipogon54.1968.4196.29485forward
CNT30604206Secale cerealeOryza punctata22.235095.48199forward
CNT30550879Secale cerealeOryza brachyantha24.1353.8797.69216reverse complement
CNT30114189Secale cerealeFicus carica50.8411.5588.57455forward

Expression of CNT30194121

Peptides detected in this lncRNA

>peptide 1 (79 aa)
DIMKFLIRSYDLIYLINGSTTKPSILGKKRSMVLFKFKALRNLQPVLCFNIISRSKRYSLFPIFSSLIKPSFRNFRITL*

>peptide 2 (51 aa)
MLEENDSSNNFFVLNASYLEELATSTIFDGYRGIQSTNLMVVCYPNHSSQP*

>peptide 3 (35 aa)
MNRKGLVFFQEISSQPSHKRFFLTPMNSINARGKR*

Sequence

>CNT30194121
GATATAATGAAATTCTTGATTCGATCTTACGACCTAATTTATTTGATTAATGGATCAACAACCAAACCATCCATTTTAGGAAAAAAAAGGAGCATGGTCT
TATTCAAATTCAAAGCGCTTCGTAATCTTCAACCAGTTTTGTGCTTCAATATAATTTCCCGGAGTAAGCGCTATAGCTTGTTTCCAATATTCAGCAGCTT
GATCAAACCAAGCTTCCGCAATTTCCGAATCACCCTCTAGAATGGCCTATAGTCGCACGTAATGACAGATCACGGCCATATTATTAAAAGCTTGCGGTAA
GAAGGGGTTTCGTTCTAGTGCCCGGAAATAATATTCCAAAGCCTTTGTATGCTCTCCATTGCTTGTGTGTATAAGGCCTATGTTATAGAGTATATAACTT
CGATCATAGGGATCGATTTCTAGTCGCGTAGCTTCATAATAATTTTGCAAAGCTTCCGCATAATTTCCTTCGGATTGAGCCAACATCCGTTACGGTCGTT
CATTCTATTCAAAAAATCTCCGTTCCAAAACCGTACATGAGGTTTTCATCTCATACGGCTCCTCCCTTCTGTACATAATAGTACTAAGCGAAATAATCTT
AATCTATAGAATCAAAATAGAATTAGTCCCGTCTCATTATGAACCGAAAGGGGCTGGTATTTTTCCAAGAAATCTCTAGCCAACCTTCCCACAAGAGGTT
TTTCTTAACACCAATGAATTCTATTAATGCTAGAGGAAAACGATAGCTCCAATAATTTCTTTGTTCTCAACGCCTCCTATTTAGAGGAATTAGCTACTTC
AACGATCTTTGATGGTTATAGGGGTATCCAAAGTACAAACCTGATGGTTGTTTGTTATCCCAACCATTCTTCCCAGCCCTGATACCGATCAGGAA