Detailed information on CNT30194088


BLAST search results

BLAST vs Swiss-Prot:
sp|P12862|ATPAM_WHEAT, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618998Secale cerealeSesamum indicum60.6536.4891.43595forward
CNT30200883Secale cerealePisum sativum82.1655.5591.44806forward
CNT3091389Secale cerealeSolanum tuberosum10.9127.1693.46107forward
CNT30220384Secale cerealeHordeum vulgare27.5298.997.41270forward
CNT30397046Secale cerealeTriticum turgidum21.5164.9298.58211reverse complement
CNT30543277Secale cerealeBrassica napus26.9143.1490.53264forward
CNT30434789Secale cerealeAegilops tauschii17.6447.2798.84173reverse complement
CNT30212621Secale cerealeHelianthus annuus86.4448.5793.99848forward
CNT30127030Secale cerealeCorymbia citriodora21.8110093.46214forward
CNT30684056Secale cerealeTriticum urartu100.141.1199.39982forward
CNT30596036Secale cerealeOryza meridionalis14.5853.1698.6143forward
CNT30481419Secale cerealeChara braunii24.8728.3784.43244forward
CNT30571978Secale cerealeVitis vinifera86.5418.4294.46849forward

Expression of CNT30194088

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MIFLREKSALKKKIFTSHNLDLNYHLVNRASRTKTITR

>peptide 2 (62 aa)
CRYATACLLRSSYIINACIPLSRKYSPMAHPEYGARNCRGAGSEAVAATRMEYSKAFASERI*

>peptide 3 (83 aa)
MRAFHYRGNIPPWHTLNMGPEIAEEQDPKRWLLQEWNIPKHSLLKEFELIVPQSSVFVQSQHRHNTMSHSHLCPLSSFAFGLI*

>peptide 4 (55 aa)
MAFPAGTSTIDPVRLTRSPSLIAVSLPKTTIPTFSFSRFKAIPFTPLANSTISPA*

>peptide 5 (38 aa)
MDDIFKGEIRFKEKDLYFTQSRFELSFGEPGISDKDNNK

Sequence

>CNT30194088
TGTCGATATGCCACCGCCTGTTTACTTAGATCATCATATATAATTAATGCGTGCATTCCATTATCGCGGAAATATTCCCCCATGGCACACCCTGAATATG
GGGCCAGAAATTGCAGAGGAGCAGGATCCGAAGCGGTGGCTGCTACAAGAATGGAATATTCCAAAGCATTCGCTTCTGAAAGAATTTGAACTAATTGTGC
CACAGTCGAGCGTTTTTGTCCAATCGCAACATAGACACAATACAATGTCTCACTCTCATTTGTGCCCCTTGAGTTCATTTGCTTTTGGTTTAATATAGTA
TCGATAGCTATTGCAGTTTTTCCAGTTTGTCTGTCCCCGATTATAAGTTATCGTTGACCACGGCCTATAGGAACCAGGCTATCCATTGCTTTTAAGCCTG
TTTGCATGGGTTCGTGCACAGATTTACGTTCAATAATCCCTGGGGCTTTCACTTCGACACGTCTTCGTTCGTGATCGCTTAGAGCCCCTTTTCCATCAAT
AGGTACTCCCAAGGCGTCGACCACACGGCCTAACATGGCCTTTCCCGCAGGAACATCCACAATAGATCCAGTGCGCTTGACAAGATCTCCTTCTTTAATA
GCGGTATCACTACCAAAGACAACAATACCTACATTCTCATTCTCAAGATTTAAGGCGATTCCTTTCACACCGCTGGCAAATTCCACCATTTCTCCTGCTT
GAATCTCGTTCAATCCATAAACACGTGCAATCCCATCTCCAACTGAGACCACTCGACCGATCTCATCCACTTGAAAATTCGTGTAAAAGTTGGTCATTCT
ACTTTCTAATAGAGTCGTGAGTTCCGCAGCTCTGGGTGAGAATTCCATACTTTAACAAATTAGATGGATGATATTTTTAAGGGAGAAATCCGCTTTAAAG
AAAAAGATCTTTACTTCACACAATCTCGATTTGAATTATCATTTGGTGAACCGGGCATCTCGGACAAAGACAATAACAAGA