Detailed information on CNT30193918


BLAST search results

BLAST vs Swiss-Prot:
sp|P27928|RT03_MAIZE, E-value = 3e-114

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30531932Secale cerealeEucalyptus grandis36.5439.1690.18224forward
CNT30479543Secale cerealeArabidopsis halleri34.4240.5885.78211forward
CNT30597171Secale cerealeOryza meridionalis14.8538.8998.991reverse complement
CNT30175657Secale cerealeVigna angularis28.0636.1390.12172forward
CNT30336644Secale cerealeCynara cardunculus39.4816.0886.78242forward

Expression of CNT30193918

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MVSITLHLFRPNPDFVLLLPVDRLDSFPCPPASHFVSFFLCTLA*

>peptide 2 (83 aa)
MVIGHGIHNVASFSAKSRFRFASPGRSTRLFSLPPGLSLRFVLPLYPRLNEDTRSARLSQMSATSPFPVVRRVLISCLVFVLVV

Sequence

>CNT30193918
CTCTTATCTAAGCTTCCTCCCTTCGCTCCCCCCATCGTAGATGGTTCAGCCACACCCGGTGCCACGAAATGATTGAGAACTAGGACGGGGTCGAAATGCA
TTTTATTCTTAGTATTAAAAAAGTATTGCATGACCGAATAATTCAAGGAGGGGCGCACAGCGGGGAGGGTCCTTTTTAGTAGATGACTCGTCGGGCCGTC
AGAGCGGGACTTCTTTGGTGAAAAGAACTTGATTCTATTCCCTTTTAGTAAGTAGGCGGCATTTCCCGTAAGGAAAGGTATGTCATTTACAACCCCGGCG
TATTGAGGCCACTTGAAGGCCCCGCTCACCCGAAGTGATTTATCAAAATTCTTCTTTCTCGATGGTGATCGGTCATGGTATCCATAACGTTGCATCTTTT
TCGGCCAAATCCAGATTTCGTTTTGCTTCTCCCGGTCGATCGACTCGACTCTTTTCCCTGCCCCCCGGCCTCTCACTTCGTTTCGTTCTTCCTCTGTACC
CTCGCTTGAATGAAGACACCCGATCGGCCCGACTTTCCCAAATGTCGGCCACCAGCCCTTTTCCTGTAGTACGGCGGGTCTTGATTTCTTGTCTTGTTTT
CGTTTTAGTCGTG