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Detailed information on CNT30193801


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT001339, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676938Secale cerealeSetaria viridis35.1351.6194.56496forward
CNT30639555Secale cerealeNymphaea colorata96.5379.895.081363forward
CNT30536068Secale cerealeEucalyptus grandis100.1441.0692.861414reverse complement
CNT30513456Secale cerealeJuglans regia98.0243.694.221384forward
CNT30500477Secale cerealeCoffea canephora87.4667.8294.661235forward
CNT30269781Secale cerealeChenopodium quinoa96.1845.9692.641358forward
CNT30730610Secale cerealeCorchorus capsularis76.35101.4194.061078forward
CNT30630109Secale cerealeVigna unguiculata100.545.0292.951419forward
CNT30196858Secale cerealePisum sativum92.9970.7192.311313forward
CNT30503447Secale cerealeNicotiana attenuata80.8868.2695.181142reverse complement
CNT3044711Secale cerealePrunus dulcis34.42101.8994.24486reverse complement
CNT3090144Secale cerealeSolanum tuberosum100.0736.0194.831413forward
CNT30588765Secale cerealeMusa acuminata42.9986.9695.39607reverse complement
CNT30511396Secale cerealeSolanum lycopersicum43.5667.2190.41615forward
CNT30266045Secale cerealeBrassica rapa23.3774.4998.48330forward
CNT30460907Secale cerealeSaccharum spontaneum10042.3899.51412forward
CNT3017045Secale cerealeZea mays10052.3798.651412reverse complement
CNT30655263Secale cerealeRosa chinensis93.4173.0791.361319forward
CNT30206293Secale cerealeHelianthus annuus88.8157.0895.371254forward
CNT30688464Secale cerealeTriticum urartu10076.7499.791412forward
CNT30357533Secale cerealeLactuca sativa30.6742.5392.38433forward
CNT30154922Secale cerealePrunus persica91.7876.7391.131296reverse complement
CNT30412061Secale cerealePapaver somniferum84.4959.1295.221193forward
CNT30319706Secale cerealeAsparagus officinalis94.6246.4996.031336forward
CNT30332807Secale cerealeDioscorea rotundata81.6669.7996.181153reverse complement
CNT30103033Secale cerealeOryza rufipogon89.5981.5698.181265reverse complement

Expression of CNT30193801

Peptides detected in this lncRNA

>peptide 1 (94 aa)
SSIYDFTFMDVDKILPFSSTLGWHSLNVNGEVQKRKGLRWIPRHPETRKGVASDEMLRGVENKHRSGDSQIGQPFKLPAESMSRQETTWRTETS*

>peptide 2 (59 aa)
MPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGCASGTKSRQTLNTRYDPKITGVKVGQ*

>peptide 3 (49 aa)
MNGAKRSAEAVGCQNASVGERSALEGSNRESGGRRSGSENVGLSNENIGE

>peptide 4 (48 aa)
MGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKSA*

>peptide 5 (38 aa)
MSRRLIGSGLVKGTEPTGAVAKASLNRAIVTAYGPEPG*

>peptide 6 (32 aa)
MSKCIGRGAFRLRGKQPRKRGSTKRKRECRLE*

>peptide 7 (29 aa)
MGHVESRVNQQGPPCKAKYSWVTDSEVVP*

Sequence

>CNT30193801
AGTTCGATCTATGATTTCACATTCATGGACGTTGATAAGATCCTTCCATTTAGTAGCACCTTAGGATGGCATAGCCTTAACGTTAATGGCGAGGTTCAAA
AGAGGAAAGGCTTGCGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGG
AGATTCCCAAATAGGTCAACCTTTTAAACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAG
AAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTTGTGCTGCTAG
GCGAAGCGGTTGAGTGCCGCACCCTAGATGGCTAAAGTCCAGTCGCCGAAAGCATCACTAGCTTACGCTCTGACCCGAGTAGCATGGGGCACGTGGAATC
CCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTCCTGGGTGACCGATAGCGAAGTAGTACCGTGAGGGAAAGGTGAAAAGAACCCCCAGTGG
GTAGTGAAATAGAACGTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAAAGTGATCTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCAT
AGGCAGTGGCTTGGTTAAGGGAACGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTAATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGA
TCTATCCATGACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG
CCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGAGTAAAGCACTGTTTCGGTGCGGGCTGCG
CGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGACCCAAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATC
GTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAG
AAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTC
AAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCAACCGCGAAAGCGGGGGTCGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGAAAA
CATTGGTGAGAA