Detailed information on CNT30193689


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT004661, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677083Secale cerealeSetaria viridis34.0658.894.77421forward
CNT30524664Secale cerealeSetaria italica98.7989.1998.361221forward
CNT30378667Secale cerealeArabidopsis thaliana23.325.7496.53288forward
CNT3062651Secale cerealeArabidopsis lyrata55.7482.8195.79689reverse complement
CNT30136319Secale cerealeLolium perenne37.4681.3799.57463reverse complement
CNT3068134Secale cerealeLeersia perrieri27.5994.294.43341reverse complement
CNT30126841Secale cerealeCorymbia citriodora27.9192.7493.33345forward
CNT30689044Secale cerealeTriticum urartu10045.8599.511236forward
CNT30370808Secale cerealeOryza glumipatula16.8395.85100208forward

Expression of CNT30193689

Peptides detected in this lncRNA

>peptide 1 (60 aa)
RKGLRWIPRHPETRKGVASDEMLRGVENKHRSGDSQIGQPFKLPAESMSRQETTWRTETS*

>peptide 2 (49 aa)
MNGAKRSAEAVGCQNASVGERSALEGSNRESGGRRSGSENVGLSNENIGE

>peptide 3 (32 aa)
MSKCIGRGAFRLRGKQPRKRGSTKRKRECRLE*

>peptide 4 (38 aa)
MSRRLIGSGLVKGTEPTGAVAKASLNRAIVTAYGPEPG*

>peptide 5 (29 aa)
MGHVESRVNQQGPPCKAKYSWVTDSEVVP*

>peptide 6 (59 aa)
MPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGCASGTKSRQTLNTRYDPKITGVKVGQ*

>peptide 7 (48 aa)
MGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKSA*

Sequence

>CNT30193689
GAGGAAAGGCTTGCGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGA
GATTCCCAAATAGGTCAACCTTTTAAACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGA
AAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTTGTGCTGCTAGG
CGAAGCGGTTGAGTGCCGCACCCTAGATGGCTAAAGTCCAGTCGCCGAAAGCATCACTAGCTTACGCTCTGACCCGAGTAGCATGGGGCACGTGGAATCC
CGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTCCTGGGTGACCGATAGCGAAGTAGTACCGTGAGGGAAAGTGATCTCTGACCGCGTGCCTG
TTGAAGAATGAGCCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAACGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTAATAGGGCGATTGTCACT
GCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGA
TGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGAGTAA
AGCACTGTTTCGGTGCGGGCTGCGCGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGACCCAAAAATAACAGGGGTCAAGGTCGGCCAGTG
AGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTGGGGGTGCA
AAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGGGCTAAGC
GATCTGCCGAAGCTGTGGGATGTCAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCAACCGCGAAAGCGGGGGTCGACGAAGCGGAAGCGA
GAATGTCGGCTTGAGTAACGAAAACATTGGTGAGAA