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Detailed information on CNT3019366


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT007113, E-value = 5e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30592668Citrullus lanatusMusa acuminata33.8110.2990.94331reverse complement
CNT30358835Citrullus lanatusLactuca sativa65.9930.4790.56646reverse complement
CNT30337438Citrullus lanatusCynara cardunculus37.7982.9692.7370reverse complement

Expression of CNT3019366

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MAFLSAAGTRGTTGHSIRSKQVLGMRRPRKDLNSH*

>peptide 2 (37 aa)
MGRSKAARPIGRGASQLDRVYEGEEPLVKGKAITSLFI

Sequence

>CNT3019366
ATTGTTATTAAGAAAGAAAAGCTTCTATTATATTAATTAAAGTTGATTCTACCCATCAAGAAAAAAGGGCTTCAGAACTTCGTAAAAGGAAAATTGTGTT
TTAGGTAAGAAAAATCAAGCAATAAGGGTCCAATTTATGTTCTAATACCCACTCACCCTGCCTATGTGGCCTTGATACACAATTGTGTTAACACGCTAAT
GACATATTTAGGGAGTGGGGTTCGGTAGAGTTATAAGTCTAGGATAACGAACTTGAAACGCGGAGCCCGAGCGGCCGGCGAGCGAGTGGTTAGTGGCCAA
TAGCGCCCTAGTTGATGGCATTCCTCTCCGCGGCTGGCACTCGAGGAACCACGGGGCACTCCATACGGAGCAAGCAAGTCTTGGGGATGAGACGCCCGCG
CAAGGACCTCAATTCTCATTAGGAGGTCGAACCAAGGACCTATGGAAGTCGGGGCTACCCCCTCCCCATGGGCAATGCAACAGTGTCCTAAGGAAGGAGT
TTAGAGGCCTTATAGTAGCACAGACTGATTTTTCTTTCTAGGTCATGTGAAGGGGGCCTGTCCAAGATCGTACTGTTGCTCTACAAAGACAACAGACGCT
CTCAACGGCTAGGCGCCACTCTCTTTCTGAGTTATTCCAGCTTCTTCATGATTTCGTGCCGCGGTAAAAAAAAAAAGGGCCGTCTCAGCGGAAGGAGAAG
GACCTGCAACGGCGGAGACTACTGACCCTCTTCTTGTTCCTAGCCGTCTGTTACGAGTCCGGGAAGCCAGGAATCCTAAATATGAGGGATCCGGATCCCT
CAAAATAGAGAAGGGTGGGCAGGGCTTCCGCAAGGGCCTCCCCCCTCTTCCCGGTCAAGATAGATGGGAAGGAGCAAAGCAGCTCGACCGATAGGGAGAG
GAGCTTCGCAGCTTGACCGAGTTTACGAGGGGGAGGAGCCGTTGGTCAAAGGAAAAGCCATAACCAGCCTCTTTATTGA