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Detailed information on CNT30193656


BLAST search results

BLAST vs Swiss-Prot:
sp|P04373|COX2_ORYSJ, E-value = 3e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618782Secale cerealeSesamum indicum27.0214.9592.51267forward
CNT30290429Secale cerealeTriticum aestivum11.5452.05100114reverse complement
CNT30592667Secale cerealeMusa acuminata47.8744.7189.85473forward
CNT30438126Secale cerealeAegilops tauschii55.3610097.99547forward
CNT30228106Secale cerealeAnanas comosus46.05105.0887.03455reverse complement
CNT30596067Secale cerealeOryza meridionalis8.8128.4398.8587reverse complement
CNT30358835Secale cerealeLactuca sativa37.6517.5591.94372forward
CNT30574573Secale cerealeVitis vinifera87.7521.5886.74867forward
CNT30104690Secale cerealeOryza rufipogon84.0166.8398.92830forward

Expression of CNT30193656

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MHSTRKRALELFERASEAFLELPPSLTRELHFRFSFLGLVGLED*

>peptide 2 (35 aa)
MMKRSFVDKARSVLDLRARVVRPHPTSIRAYALHS*

Sequence

>CNT30193656
TAGGGCTATAAGTAGGCCGTTTGCTATTGCAATAAGGGCTGCTCGCCTTTCCTTTTGACGGCTTGGCTTCCTATCGCTCCTATGTAGTGGTCGGCCTTAA
AAGGAGTCTTCCTACCATACCATCATGCATGCCTATGTTATAGTGCGTTAAGCTTCGCCAGAAGCAAGCAAGATGATGAAGCGAAGCTTCGTAGACAAGG
CTCGTTCCGTGCTTGACTTACGAGCTCGTGTAGTAAGGCCTCACCCTACTTCAATAAGGGCTTATGCACTCCACTCGTAAACGAGCGTTAGAGCTTTTTG
AGCGAGCGAGCGAAGCCTTCCTGGAGCTTCCCCCTTCCCTCACCCGAGAATTGCATTTCCGCTTCAGCTTCCTCGGTTTAGTTGGTTTGGAGGATTAATT
GATTGGATACCCAATCCGCATAATCTTTCAAAGTCACTGCTTCTACGACGATAGGCGTAAAGGCATGATTAGTTCCACGAATCTCACTGCACTGACCATA
GTAAACTCCTTCTCGTTGTACCGAGATGGAGGTAAGATTTGAACGACCAGGTACAGCATCACATTTGACACCTGAGGAAGGTACAGCCCAACTATGAGGT
ACATCAGCGGGTGTTACAATCATACGTAGATGAGTTTTGGCTGGTACAACCACTCTATTGTCAACTTCTAATAAACGTGATTGACCCAATTCTGGATCAT
CTTCTGGAATCGTATAACTGTCAAAAGTGAGTGACTGTTCATCGGAACTGTTATAGTCCGAATACTCATAAGGTTGGGTCGACGCCCGCCTCCCCCCAAA
CTTGACTTGCAAGTTTCCCCGCAAAAAGCTCTCCACGCCTACTCTTATTTATAAAGAGCACTATTCTTCTTTAGTTAGGTAGTTCTCCCCCCTCTATGAG
ACCGTAAGACCCCGGTGGAATCGAAGGCCCGCTTACTAATAGGCAAGAGGGGACCCTTTCTCGCCCAGCCCTACCTACATCAGTGAAG