CANTATAdb - search

Detailed information on CNT30193442

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30468477	Secale cereale	Saccharum spontaneum	28.47	89.33	92.04	201	forward

Expression of CNT30193442

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MKYLTKTGFHSTFLFLNNNLCYQLFRVFKVINCLIPYF*

>peptide 2 (42 aa)
LIHMLYSKSICFKWIREIWIVRSAQIVSFSFCLDTKRYEIFD*

Sequence

>CNT30193442
GATTGATCCATATGCTTTACTCTAAATCCATATGCTTTAAATGGATAAGAGAGATATGGATTGTCCGCTCAGCTCAAATTGTATCCTTTTCCTTCTGCTT
GGACACGAAGAGATATGAAATATTTGACTAAGACTGGATTTCATTCCACTTTCCTATTTCTGAACAACAACTTATGTTATCAACTATTTCGTGTTTTCAA
AGTTATTAATTGTCTCATACCCTATTTTTGATTTCGATAGTATGGTGTAGCGTATCTTATGCAAACGGAATTCTAAGGTTTCTTTATTTTATTATGCAAT
AAGAAGAATTCTTCCATTTTCTTTTTTTTTCTTTAGTTGCGGGAAAACCCAAATTAAAACTTTTATTTTATAGCGAGCGCAATTTCTAGTAAAAAATCCT
GTATCCTTCCACTTAGATCAAAAGGAATTTTTCCAATAGAACTATGGAACCCCCGAGTGGTTGCGGTTGTACCTGTACTGCAGGAATAAGAAAACTCGCT
ATTCACTCAGTTTATTTTCCATAATAAGTTATGTAGGAGAGATGGCCGAGCGGTTCAAGGCGTAGCATTGGAACTGCTATGTAGACTTTTGTTTACCGAG
GGTTCGAATCCCTCTCTTTCCGTTTTTCTTAATTCATCAACGTTAAGGATCACAATGTATCAAATCAAATAACCATTTTTTCCAGCAATAATATAATAGC
TTATAT